Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2679463..2679608 | Replicon | chromosome |
| Accession | NZ_CP050858 | ||
| Organism | Klebsiella pneumoniae strain SCH6109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2679499..2679601 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2679463..2679608 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC233_RS13070 | 2674592..2676652 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HC233_RS13075 | 2676656..2677315 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HC233_RS13080 | 2677394..2677624 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HC233_RS13085 | 2677737..2678111 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HC233_RS13090 | 2678115..2678985 | + | 871 | Protein_2486 | copper homeostasis membrane protein CopD | - |
| HC233_RS13095 | 2679002..2679340 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2679463..2679608 | - | 146 | - | - | Antitoxin |
| - | 2679499..2679601 | + | 103 | - | - | Toxin |
| HC233_RS13100 | 2679976..2680119 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HC233_RS13105 | 2680224..2681192 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HC233_RS13110 | 2681349..2682002 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| HC233_RS13115 | 2681999..2682190 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HC233_RS13120 | 2682288..2682527 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HC233_RS13125 | 2682643..2684076 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153370 NZ_CP050858:2679499-2679601 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153370 NZ_CP050858:c2679608-2679463 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
