Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1818007..1818152 | Replicon | chromosome |
| Accession | NZ_CP050845 | ||
| Organism | Klebsiella pneumoniae strain Bckp206 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1818043..1818145 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1818007..1818152 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC704_RS08975 | 1813137..1815197 | + | 2061 | WP_032444542.1 | oligopeptidase B | - |
| HC704_RS08980 | 1815201..1815860 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HC704_RS08985 | 1815939..1816169 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HC704_RS08990 | 1816282..1816656 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HC704_RS08995 | 1816660..1817529 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HC704_RS09000 | 1817546..1817884 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1818007..1818152 | - | 146 | - | - | Antitoxin |
| - | 1818043..1818145 | + | 103 | - | - | Toxin |
| HC704_RS09005 | 1818520..1818663 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HC704_RS09010 | 1818768..1819736 | - | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| HC704_RS09015 | 1819893..1820546 | + | 654 | WP_031589291.1 | protein-serine/threonine phosphatase | - |
| HC704_RS09020 | 1820543..1820734 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HC704_RS09025 | 1820832..1821071 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HC704_RS09030 | 1821187..1822620 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153322 NZ_CP050845:1818043-1818145 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153322 NZ_CP050845:c1818152-1818007 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
