Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1903300..1903445 | Replicon | chromosome |
| Accession | NZ_CP050840 | ||
| Organism | Klebsiella pneumoniae strain Bckp101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1903336..1903438 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1903300..1903445 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC692_RS09390 | 1898430..1900490 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HC692_RS09395 | 1900494..1901153 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HC692_RS09400 | 1901232..1901462 | - | 231 | WP_117024991.1 | DNA polymerase III subunit theta | - |
| HC692_RS09405 | 1901575..1901949 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HC692_RS09410 | 1901953..1902822 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| HC692_RS09415 | 1902839..1903177 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1903300..1903445 | - | 146 | - | - | Antitoxin |
| - | 1903336..1903438 | + | 103 | - | - | Toxin |
| HC692_RS09420 | 1903813..1903956 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HC692_RS09425 | 1904061..1905029 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HC692_RS09430 | 1905186..1905839 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| HC692_RS09435 | 1905836..1906027 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HC692_RS09440 | 1906125..1906364 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HC692_RS09445 | 1906480..1907913 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153284 NZ_CP050840:1903336-1903438 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153284 NZ_CP050840:c1903445-1903300 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
