Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3425442..3425587 | Replicon | chromosome |
| Accession | NZ_CP050834 | ||
| Organism | Klebsiella pneumoniae strain Bckp021 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3425449..3425551 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3425442..3425587 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC680_RS16935 | 3420973..3422406 | + | 1434 | WP_032447684.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HC680_RS16940 | 3422522..3422761 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HC680_RS16945 | 3422859..3423050 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HC680_RS16950 | 3423047..3423700 | - | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| HC680_RS16955 | 3423857..3424825 | + | 969 | WP_074185275.1 | DUF535 family protein | - |
| HC680_RS16960 | 3424930..3425073 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3425442..3425587 | + | 146 | - | - | Antitoxin |
| - | 3425449..3425551 | - | 103 | - | - | Toxin |
| HC680_RS16965 | 3425710..3426048 | - | 339 | WP_016529031.1 | YebY family protein | - |
| HC680_RS16970 | 3426065..3426934 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HC680_RS16975 | 3426938..3427312 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HC680_RS16980 | 3427425..3427655 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HC680_RS16985 | 3427734..3428393 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HC680_RS16990 | 3428397..3430457 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153264 NZ_CP050834:c3425551-3425449 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153264 NZ_CP050834:3425442-3425587 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
