Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1826529..1826674 | Replicon | chromosome |
| Accession | NZ_CP050826 | ||
| Organism | Klebsiella pneumoniae strain Bckp212 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1826565..1826667 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1826529..1826674 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC649_RS09045 | 1821659..1823719 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HC649_RS09050 | 1823723..1824382 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HC649_RS09055 | 1824461..1824691 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HC649_RS09060 | 1824804..1825178 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HC649_RS09065 | 1825182..1826051 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HC649_RS09070 | 1826068..1826406 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1826529..1826674 | - | 146 | - | - | Antitoxin |
| - | 1826565..1826667 | + | 103 | - | - | Toxin |
| HC649_RS09075 | 1827042..1827185 | - | 144 | WP_065518782.1 | Ecr family regulatory small membrane protein | - |
| HC649_RS09080 | 1827290..1828258 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HC649_RS09085 | 1828415..1829068 | + | 654 | WP_065518783.1 | protein-serine/threonine phosphatase | - |
| HC649_RS09090 | 1829065..1829256 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HC649_RS09095 | 1829354..1829593 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HC649_RS09100 | 1829709..1831142 | - | 1434 | WP_167812973.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153214 NZ_CP050826:1826565-1826667 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT153214 NZ_CP050826:c1826674-1826529 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
