Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986618..1986762 | Replicon | chromosome |
| Accession | NZ_CP050680 | ||
| Organism | Klebsiella variicola strain SHET-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986654..1986756 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986618..1986762 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCO75_RS09650 (HCO75_09750) | 1981748..1983808 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| HCO75_RS09655 (HCO75_09755) | 1983812..1984471 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| HCO75_RS09660 (HCO75_09760) | 1984550..1984780 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| HCO75_RS09665 (HCO75_09765) | 1984894..1985268 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| HCO75_RS09670 (HCO75_09770) | 1985272..1986141 | + | 870 | WP_039103972.1 | copper homeostasis membrane protein CopD | - |
| HCO75_RS09675 (HCO75_09775) | 1986158..1986496 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1986618..1986762 | - | 145 | - | - | Antitoxin |
| - | 1986654..1986756 | + | 103 | - | - | Toxin |
| HCO75_RS09680 (HCO75_09780) | 1987141..1987284 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| HCO75_RS09685 (HCO75_09785) | 1987388..1988356 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| HCO75_RS09690 (HCO75_09790) | 1988513..1989166 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| HCO75_RS09695 (HCO75_09795) | 1989163..1989354 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HCO75_RS09700 (HCO75_09800) | 1989452..1989691 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HCO75_RS09705 (HCO75_09805) | 1989807..1991240 | - | 1434 | WP_012541265.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T153079 NZ_CP050680:1986654-1986756 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT153079 NZ_CP050680:c1986762-1986618 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
