Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 318556..318827 Replicon chromosome
Accession NZ_CP050646
Organism Escherichia coli strain PapM-36-2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 318686..318789 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 318556..318827 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6008_RS01655 315111..315773 - 663 WP_000944256.1 exodeoxyribonuclease X -
G6008_RS01660 315797..316453 - 657 WP_000011652.1 carbon-nitrogen hydrolase family protein -
G6008_RS01665 316555..316785 - 231 WP_000916763.1 DNA polymerase III subunit theta -
G6008_RS01670 316924..317298 + 375 WP_000204699.1 CopC domain-containing protein YobA -
G6008_RS01675 317302..318174 + 873 WP_000879285.1 copper homeostasis membrane protein CopD -
G6008_RS01680 318187..318528 + 342 WP_000976492.1 YebY family protein -
- 318556..318827 - 272 - - Antitoxin
- 318686..318789 + 104 - - Toxin
G6008_RS01685 318924..319580 + 657 WP_000812734.1 protein-serine/threonine phosphatase -
G6008_RS01690 319581..319772 - 192 WP_001296140.1 YebW family protein -
G6008_RS01695 319877..320113 - 237 WP_001295499.1 DUF1480 family protein -
G6008_RS01700 320231..321670 - 1440 WP_024190454.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T153040 NZ_CP050646:318686-318789 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT153040 NZ_CP050646:c318827-318556 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References