Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088947..2089089 | Replicon | chromosome |
| Accession | NZ_CP050508 | ||
| Organism | Raoultella terrigena strain JH01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088982..2089085 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088947..2089089 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCK03_RS09795 | 2084059..2086119 | + | 2061 | WP_167691495.1 | oligopeptidase B | - |
| HCK03_RS09800 | 2086129..2086788 | - | 660 | WP_041146220.1 | exodeoxyribonuclease X | - |
| HCK03_RS09805 | 2086867..2087097 | - | 231 | WP_041146219.1 | DNA polymerase III subunit theta | - |
| HCK03_RS09810 | 2087223..2087597 | + | 375 | WP_167692424.1 | CopC domain-containing protein YobA | - |
| HCK03_RS09815 | 2087601..2088470 | + | 870 | WP_167691496.1 | copper homeostasis membrane protein CopD | - |
| HCK03_RS09820 | 2088487..2088825 | + | 339 | WP_041146216.1 | YebY family protein | - |
| - | 2088947..2089089 | - | 143 | - | - | Antitoxin |
| - | 2088982..2089085 | + | 104 | - | - | Toxin |
| HCK03_RS09825 | 2089434..2089577 | - | 144 | WP_141334947.1 | Ecr family regulatory small membrane protein | - |
| HCK03_RS09830 | 2089683..2090642 | - | 960 | WP_115192392.1 | VirK/YbjX family protein | - |
| HCK03_RS09835 | 2090806..2091459 | + | 654 | WP_115192393.1 | protein-serine/threonine phosphatase | - |
| HCK03_RS09840 | 2091456..2091647 | - | 192 | WP_041146213.1 | YebW family protein | - |
| HCK03_RS09845 | 2091745..2091984 | - | 240 | WP_041146212.1 | YebV family protein | - |
| HCK03_RS09850 | 2092100..2093533 | - | 1434 | WP_115192394.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152980 NZ_CP050508:2088982-2089085 [Raoultella terrigena]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT152980 NZ_CP050508:c2089089-2088947 [Raoultella terrigena]
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
AGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGT
