Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905645..1905845 | Replicon | chromosome |
| Accession | NZ_CP050506 | ||
| Organism | Enterobacter hormaechei strain CM18-242-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905738..1905841 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905645..1905845 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCU35_RS08920 | 1902182..1902844 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| HCU35_RS08925 | 1902869..1903519 | - | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| HCU35_RS08930 | 1903631..1903861 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HCU35_RS08935 | 1903999..1904370 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| HCU35_RS08940 | 1904372..1905241 | + | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| HCU35_RS08945 | 1905258..1905596 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1905645..1905845 | - | 201 | - | - | Antitoxin |
| HCU35_RS08950 | 1905722..1905919 | - | 198 | WP_032669636.1 | hypothetical protein | - |
| - | 1905738..1905841 | + | 104 | - | - | Toxin |
| HCU35_RS08955 | 1905965..1906945 | - | 981 | WP_045341271.1 | VirK/YbjX family protein | - |
| HCU35_RS08960 | 1907113..1907757 | + | 645 | WP_045341270.1 | protein-serine/threonine phosphatase | - |
| HCU35_RS08965 | 1907792..1908031 | - | 240 | WP_003859885.1 | YebV family protein | - |
| HCU35_RS08970 | 1908138..1909586 | - | 1449 | WP_195892025.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152965 NZ_CP050506:1905738-1905841 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT152965 NZ_CP050506:c1905845-1905645 [Enterobacter hormaechei]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
