Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 208888..209159 | Replicon | chromosome |
| Accession | NZ_CP050498 | ||
| Organism | Escherichia coli strain RM13322 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 209018..209121 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 208888..209159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCR07_RS01250 | 205443..206105 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HCR07_RS01255 | 206129..206785 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HCR07_RS01260 | 206887..207117 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HCR07_RS01265 | 207256..207630 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HCR07_RS01270 | 207634..208506 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HCR07_RS01275 | 208519..208860 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 208888..209159 | - | 272 | - | - | Antitoxin |
| - | 209018..209121 | + | 104 | - | - | Toxin |
| HCR07_RS01280 | 209256..209912 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HCR07_RS01285 | 209913..210104 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HCR07_RS01290 | 210209..210445 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HCR07_RS01295 | 210563..212002 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152929 NZ_CP050498:209018-209121 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152929 NZ_CP050498:c209159-208888 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACATATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
