Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3284..3424 | Replicon | chromosome |
| Accession | NZ_CP050447 | ||
| Organism | Serratia marcescens strain SER00094 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3328..3424 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3284..3424 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCG50_RS00005 | 91..321 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| HCG50_RS00010 | 665..1183 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| HCG50_RS00015 | 1508..1891 | + | 384 | WP_025302450.1 | CopC domain-containing protein YobA | - |
| HCG50_RS00020 | 1894..2775 | + | 882 | WP_167324228.1 | copper homeostasis membrane protein CopD | - |
| HCG50_RS00025 | 2845..3186 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 3284..3424 | - | 141 | - | - | Antitoxin |
| - | 3328..3424 | + | 97 | - | - | Toxin |
| HCG50_RS00030 | 3669..4076 | + | 408 | WP_167324229.1 | hypothetical protein | - |
| HCG50_RS00035 | 4212..4562 | + | 351 | WP_025302454.1 | DUF4377 domain-containing protein | - |
| HCG50_RS00040 | 4601..5437 | - | 837 | WP_167324230.1 | aminoglycoside phosphotransferase family protein | - |
| HCG50_RS00045 | 5638..6837 | + | 1200 | WP_025302456.1 | trans-2-enoyl-CoA reductase family protein | - |
| HCG50_RS00050 | 6995..7558 | + | 564 | WP_025302458.1 | DUF2975 domain-containing protein | - |
| HCG50_RS00055 | 7533..7781 | + | 249 | WP_167324231.1 | helix-turn-helix transcriptional regulator | - |
| HCG50_RS00060 | 8009..8248 | + | 240 | WP_072008265.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T152876 NZ_CP050447:3328-3424 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT152876 NZ_CP050447:c3424-3284 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
