Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2569872..2570143 | Replicon | chromosome |
| Accession | NZ_CP050382 | ||
| Organism | Escherichia coli strain 52148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2570002..2570105 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2569872..2570143 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB638_RS12235 | 2566427..2567089 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HB638_RS12240 | 2567113..2567769 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HB638_RS12245 | 2567871..2568101 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HB638_RS12250 | 2568240..2568614 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HB638_RS12255 | 2568618..2569490 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HB638_RS12260 | 2569503..2569844 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2569872..2570143 | - | 272 | - | - | Antitoxin |
| - | 2570002..2570105 | + | 104 | - | - | Toxin |
| HB638_RS12265 | 2570240..2570896 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HB638_RS12270 | 2570897..2571088 | - | 192 | WP_047149202.1 | YebW family protein | - |
| HB638_RS12275 | 2571193..2571429 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HB638_RS12280 | 2571547..2572986 | - | 1440 | WP_024191489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152799 NZ_CP050382:2570002-2570105 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152799 NZ_CP050382:c2570143-2569872 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
