Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3460267..3460412 | Replicon | chromosome |
| Accession | NZ_CP050376 | ||
| Organism | Klebsiella pneumoniae strain 51015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3460274..3460376 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3460267..3460412 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB813_RS16900 | 3455798..3457231 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HB813_RS16905 | 3457347..3457586 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HB813_RS16910 | 3457684..3457875 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HB813_RS16915 | 3457872..3458525 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HB813_RS16920 | 3458682..3459650 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HB813_RS16925 | 3459755..3459898 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3460267..3460412 | + | 146 | - | - | Antitoxin |
| - | 3460274..3460376 | - | 103 | - | - | Toxin |
| HB813_RS16930 | 3460535..3460873 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HB813_RS16935 | 3460890..3461759 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HB813_RS16940 | 3461763..3462137 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HB813_RS16945 | 3462250..3462480 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HB813_RS16950 | 3462559..3463218 | + | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| HB813_RS16955 | 3463222..3465282 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T152772 NZ_CP050376:c3460376-3460274 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT152772 NZ_CP050376:3460267-3460412 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
