Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905647..1905847 | Replicon | chromosome |
| Accession | NZ_CP050311 | ||
| Organism | Enterobacter hormaechei strain CM18-216 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905740..1905843 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905647..1905847 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBK83_RS08920 | 1902184..1902846 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| HBK83_RS08925 | 1902871..1903521 | - | 651 | WP_045341276.1 | carbon-nitrogen hydrolase family protein | - |
| HBK83_RS08930 | 1903633..1903863 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HBK83_RS08935 | 1904001..1904372 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| HBK83_RS08940 | 1904374..1905243 | + | 870 | WP_045341273.1 | copper homeostasis membrane protein CopD | - |
| HBK83_RS08945 | 1905260..1905598 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1905647..1905847 | - | 201 | - | - | Antitoxin |
| HBK83_RS08950 | 1905724..1905921 | - | 198 | WP_032669636.1 | hypothetical protein | - |
| - | 1905740..1905843 | + | 104 | - | - | Toxin |
| HBK83_RS08955 | 1905967..1906947 | - | 981 | WP_045341271.1 | VirK/YbjX family protein | - |
| HBK83_RS08960 | 1907115..1907759 | + | 645 | WP_045341270.1 | protein-serine/threonine phosphatase | - |
| HBK83_RS08965 | 1907794..1908033 | - | 240 | WP_003859885.1 | YebV family protein | - |
| HBK83_RS08970 | 1908140..1909588 | - | 1449 | WP_195892025.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152502 NZ_CP050311:1905740-1905843 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 201 bp
>AT152502 NZ_CP050311:c1905847-1905647 [Enterobacter hormaechei]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTC
TGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
