152496

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 3447150..3447630 Replicon chromosome
Accession NZ_CP050308
Organism Rhizobium lusitanum strain 629

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag HB780_RS30385 Protein ID WP_183691857.1
Coordinates 3447358..3447630 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag HB780_RS30380 Protein ID WP_183697637.1
Coordinates 3447150..3447374 (+) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HB780_RS30350 3442508..3443638 + 1131 WP_183691846.1 site-specific DNA-methyltransferase -
HB780_RS30355 3443818..3444183 - 366 WP_183691848.1 nuclear transport factor 2 family protein -
HB780_RS30360 3444188..3444802 - 615 WP_183691850.1 HAD family phosphatase -
HB780_RS30365 3444820..3445929 - 1110 WP_183691851.1 A/G-specific adenine glycosylase -
HB780_RS30370 3446042..3446494 + 453 WP_183691853.1 hypothetical protein -
HB780_RS30375 3446553..3447071 + 519 WP_183691855.1 DUF721 domain-containing protein -
HB780_RS30380 3447150..3447374 + 225 WP_183697637.1 TraY domain-containing protein Antitoxin
HB780_RS30385 3447358..3447630 + 273 WP_183691857.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HB780_RS30390 3447819..3448556 + 738 WP_183691858.1 DsbA family protein -
HB780_RS30395 3448745..3452206 + 3462 WP_183691860.1 chromosome segregation protein SMC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-88)

Antitoxin

Relaxosome protein TraY

(4-49)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10687.37 Da        Isoelectric Point: 10.5728

>T152496 WP_183691857.1 NZ_CP050308:3447358-3447630 [Rhizobium lusitanum]
MAWKVEFQRPAERELEKLGHETARRILKFLHERVAKLDNPRSIGEALKGSELGDFWKYRVGDYRVIAHIEDSAIRILIVR
VGNRREVYRK

Download         Length: 273 bp

>T152496 NZ_CP066229:1282127-1282309 [Acinetobacter baumannii]
GTGAAAAGTCTGGATTTAATCAAAATGATTGAAGCAGATGGTTGGTATGAGGTTAGGGTTTCAGGAAGTCATCATCACTT
TAAACACCCAACCAAAAAGGGGTTAGTTACAATCCCACATCCTAAAAAGGATTTACCAAACGGAACTGTTAAAAGCATTT
TGAAACAAGCGGGTCTAAATTGA

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8553.71 Da        Isoelectric Point: 4.5702

>AT152496 WP_183697637.1 NZ_CP050308:3447150-3447374 [Rhizobium lusitanum]
MLALRLPPEIEARLDELAKRTGRSKSFYAREAILEHLDDLEDIYLAEKRLEEFRRGESDTVSLAELMARYGVEG

Download         Length: 225 bp

>AT152496 NZ_CP066229:1282402-1282806 [Acinetobacter baumannii]
ATGTTATATCCAATTGCAATTGAACGAGGATCAGATACTGAGGCATTTGGTGTCACTGTTCCTGATATTCCAGGTTGTTT
TAGTGCTGGTGACACACTTGAAGAAGCTATTGAGAATGTTAAAGAAGCTATTTCAGGCCATTTAGAAATATTGGCTGAAG
ATGGTGAGGAAATCCCATTAGCTTCCGAACTAGTTAAATTTGTCGATGATCCTGAATATAAAGGAATGATCTGGGCGGTT
ACCGAAGTTGATGTTAGTCGTTATCTGGGTAAACCAGAAAAAATCAATGTTACTTTACCAAGCCGTTTGATTCGTAAAAT
TGATGAGAATGTAGGTAAAGGTAAGAGATATACTACTCGATCGGCTTTCTTGGCTGCTGGTGCTGAAAAACTTTTACATG
CATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References