Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 901187..901640 Replicon chromosome
Accession NZ_CP050258
Organism Erwinia amylovora strain FB-86

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag EHW96_RS03935 Protein ID WP_013035888.1
Coordinates 901404..901640 (+) Length 79 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID D4HZA2
Locus tag EHW96_RS03930 Protein ID WP_004159527.1
Coordinates 901187..901414 (+) Length 76 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EHW96_RS03920 900012..900515 + 504 WP_048901601.1 hypothetical protein -
EHW96_RS03925 900579..900866 - 288 WP_004159528.1 SymE family type I addiction module toxin -
EHW96_RS03930 901187..901414 + 228 WP_004159527.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
EHW96_RS03935 901404..901640 + 237 WP_013035888.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
EHW96_RS03940 901627..901845 - 219 WP_004159522.1 hypothetical protein -
EHW96_RS03945 902173..904389 + 2217 Protein_749 ferrichrome porin FhuA -
EHW96_RS03950 904438..905232 + 795 WP_004159512.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC -
EHW96_RS03955 905247..906125 + 879 WP_004159509.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 79 a.a.        Molecular weight: 9135.79 Da        Isoelectric Point: 9.0876

>T152428 WP_013035888.1 NZ_CP050258:901404-901640 [Erwinia amylovora]
ISYELLFDPWALKEWKKLGATVREQFKKKLAEVLVNLQVESARLRDHPDCCKIKLKSSGYRLVYQVQDEQLVMLVISV

Download         Length: 237 bp

>T152428 NZ_CP066151:329445-329813 [Klebsiella pneumoniae]
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8435.90 Da        Isoelectric Point: 7.9766

>AT152428 WP_004159527.1 NZ_CP050258:901187-901414 [Erwinia amylovora]
VRLDDKLKSKACAVLDELDVSPTEAVRLLFQYIAENERLPLKALTVSDEKDALLKTVRERLASLQKGIKVTLDKL

Download         Length: 228 bp

>AT152428 NZ_CP066151:329227-329448 [Klebsiella pneumoniae]
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A831A410

References