Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 901187..901640 | Replicon | chromosome |
Accession | NZ_CP050258 | ||
Organism | Erwinia amylovora strain FB-86 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | EHW96_RS03935 | Protein ID | WP_013035888.1 |
Coordinates | 901404..901640 (+) | Length | 79 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | D4HZA2 |
Locus tag | EHW96_RS03930 | Protein ID | WP_004159527.1 |
Coordinates | 901187..901414 (+) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EHW96_RS03920 | 900012..900515 | + | 504 | WP_048901601.1 | hypothetical protein | - |
EHW96_RS03925 | 900579..900866 | - | 288 | WP_004159528.1 | SymE family type I addiction module toxin | - |
EHW96_RS03930 | 901187..901414 | + | 228 | WP_004159527.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
EHW96_RS03935 | 901404..901640 | + | 237 | WP_013035888.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
EHW96_RS03940 | 901627..901845 | - | 219 | WP_004159522.1 | hypothetical protein | - |
EHW96_RS03945 | 902173..904389 | + | 2217 | Protein_749 | ferrichrome porin FhuA | - |
EHW96_RS03950 | 904438..905232 | + | 795 | WP_004159512.1 | Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC | - |
EHW96_RS03955 | 905247..906125 | + | 879 | WP_004159509.1 | Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 79 a.a. Molecular weight: 9135.79 Da Isoelectric Point: 9.0876
>T152428 WP_013035888.1 NZ_CP050258:901404-901640 [Erwinia amylovora]
ISYELLFDPWALKEWKKLGATVREQFKKKLAEVLVNLQVESARLRDHPDCCKIKLKSSGYRLVYQVQDEQLVMLVISV
ISYELLFDPWALKEWKKLGATVREQFKKKLAEVLVNLQVESARLRDHPDCCKIKLKSSGYRLVYQVQDEQLVMLVISV
Download Length: 237 bp
>T152428 NZ_CP066151:329445-329813 [Klebsiella pneumoniae]
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
ATGACGCTGCAGATTATCTCAGCGGAAGAGATAATACAGTTTCACGACAGGCTGCTCCGCGTCACGCCTGGCGTTGCCGG
TATGCCCGATCCAGGGCGTGCCGAAGCGATAATGTATAGGGTGCTAAACAAAATTGAATATGAAGGTGTGACAGACGTGT
GGCGACTCGCTGCGATGCATCTGCTGGCGATTTCTCGCGGTCATATATTTAATGATGGTAATAAGCGTACGGCACTGTTT
ATCACTCTGCTTTTTTTAAAGCGAAATGGAATTATATTGCCGGCGAATCCAGACTTCGTCGGCATGACCGTCGAGGCGGC
AGCAGGGCAACTTACCCTGGAACAGATTGTCGCGCGCTTGCGCGGATGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8435.90 Da Isoelectric Point: 7.9766
>AT152428 WP_004159527.1 NZ_CP050258:901187-901414 [Erwinia amylovora]
VRLDDKLKSKACAVLDELDVSPTEAVRLLFQYIAENERLPLKALTVSDEKDALLKTVRERLASLQKGIKVTLDKL
VRLDDKLKSKACAVLDELDVSPTEAVRLLFQYIAENERLPLKALTVSDEKDALLKTVRERLASLQKGIKVTLDKL
Download Length: 228 bp
>AT152428 NZ_CP066151:329227-329448 [Klebsiella pneumoniae]
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA
ATGAGAACGGTTAACTATAGCGAAGCCCGGCAAAATCTGGCCGATGTGCTGGAAAGCGCAGTGACAGGTGTACCTGTGAC
CATTACCCGTCGTGGGCATAAATCTGCAGTCATCATTAGTGCAGAAGAGTTTGAACGCTACCAGACGGCCAGAATGGATG
ATGAGTTCGCGGCTATCATGGCGGTTCATGGTGATGAGATCAGGGAGCTTGCGGATAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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