Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2051765..2052036 | Replicon | chromosome |
| Accession | NZ_CP050173 | ||
| Organism | Escherichia coli strain STB20-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2051895..2051998 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2051765..2052036 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIP50_RS09985 | 2048320..2048982 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| FIP50_RS09990 | 2049006..2049662 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FIP50_RS09995 | 2049764..2049994 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FIP50_RS10000 | 2050133..2050507 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FIP50_RS10005 | 2050511..2051383 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FIP50_RS10010 | 2051396..2051737 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2051765..2052036 | - | 272 | - | - | Antitoxin |
| - | 2051895..2051998 | + | 104 | - | - | Toxin |
| FIP50_RS10015 | 2052133..2052789 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| FIP50_RS10020 | 2052790..2052981 | - | 192 | WP_001338167.1 | YebW family protein | - |
| FIP50_RS10025 | 2053086..2053322 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| FIP50_RS10030 | 2053440..2054879 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152362 NZ_CP050173:2051895-2051998 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152362 NZ_CP050173:c2052036-2051765 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
