Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2382275..2382392 | Replicon | chromosome |
| Accession | NZ_CP050150 | ||
| Organism | Hafnia alvei strain A23BA | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2382288..2382391 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2382275..2382392 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBA19_RS11000 | 2377435..2377926 | - | 492 | WP_166493208.1 | GAF domain-containing protein | - |
| HBA19_RS11005 | 2378157..2379401 | + | 1245 | WP_166493209.1 | membrane integrity lipid transport subunit YebS | - |
| HBA19_RS11010 | 2379370..2382000 | + | 2631 | WP_043493389.1 | PqiB family protein | - |
| - | 2382275..2382392 | - | 118 | - | - | Antitoxin |
| - | 2382288..2382391 | + | 104 | - | - | Toxin |
| HBA19_RS11015 | 2383135..2383275 | - | 141 | WP_166493210.1 | hypothetical protein | - |
| HBA19_RS11020 | 2383378..2384325 | + | 948 | WP_166493211.1 | hypothetical protein | - |
| HBA19_RS11025 | 2384367..2384822 | - | 456 | WP_166493212.1 | hypothetical protein | - |
| HBA19_RS11030 | 2384883..2385143 | - | 261 | WP_166493213.1 | hypothetical protein | - |
| HBA19_RS11035 | 2385505..2385690 | + | 186 | WP_166493214.1 | hypothetical protein | - |
| HBA19_RS11040 | 2385814..2386014 | + | 201 | WP_166493215.1 | hypothetical protein | - |
| HBA19_RS11045 | 2386022..2386615 | + | 594 | WP_166493216.1 | 3'-5' exoribonuclease | - |
| HBA19_RS11050 | 2386623..2386991 | + | 369 | WP_166492649.1 | hypothetical protein | - |
| HBA19_RS11055 | 2386891..2387130 | + | 240 | WP_166493217.1 | ANR family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152316 NZ_CP050150:2382288-2382391 [Hafnia alvei]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTCTTTTT
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTCTTTTT
Antitoxin
Download Length: 118 bp
>AT152316 NZ_CP050150:c2382392-2382275 [Hafnia alvei]
TAAAAAGAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG
TAAAAAGAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG
