Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1947319..1947464 | Replicon | chromosome |
| Accession | NZ_CP050078 | ||
| Organism | Citrobacter koseri strain NJ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1947354..1947457 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1947319..1947464 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCK_RS09250 | 1943775..1944437 | - | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
| NCK_RS09255 | 1944461..1945117 | - | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| NCK_RS09260 | 1945223..1945453 | - | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| NCK_RS09265 | 1945594..1945968 | + | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| NCK_RS09270 | 1945968..1946843 | + | 876 | WP_080975461.1 | copper homeostasis membrane protein CopD | - |
| NCK_RS09275 | 1946860..1947198 | + | 339 | WP_012132024.1 | YebY family protein | - |
| - | 1947319..1947464 | - | 146 | - | - | Antitoxin |
| - | 1947354..1947457 | + | 104 | - | - | Toxin |
| NCK_RS09280 | 1947865..1948056 | - | 192 | WP_012132027.1 | YlcI/YnfO family protein | - |
| NCK_RS09285 | 1948426..1950513 | - | 2088 | WP_071259049.1 | TonB-dependent receptor | - |
| NCK_RS09290 | 1950762..1951424 | + | 663 | WP_047464032.1 | protein-serine/threonine phosphatase | - |
| NCK_RS09295 | 1951425..1951616 | - | 192 | WP_012132031.1 | YebW family protein | - |
| NCK_RS09300 | 1951719..1951955 | - | 237 | WP_024130262.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152213 NZ_CP050078:1947354-1947457 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT152213 NZ_CP050078:c1947464-1947319 [Citrobacter koseri]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
