Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2734576..2734720 | Replicon | chromosome |
| Accession | NZ_CP050073 | ||
| Organism | Enterobacter kobei strain 070 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2734582..2734685 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2734576..2734720 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA514_RS13170 | 2729716..2731158 | + | 1443 | WP_121527977.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HA514_RS13175 | 2731264..2731503 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HA514_RS13180 | 2731538..2732182 | - | 645 | WP_121527978.1 | protein-serine/threonine phosphatase | - |
| HA514_RS13185 | 2732350..2733291 | + | 942 | WP_014884298.1 | VirK/YbjX family protein | - |
| HA514_RS13190 | 2733466..2734362 | + | 897 | WP_048995793.1 | benzoate transporter | - |
| - | 2734576..2734720 | + | 145 | - | - | Antitoxin |
| - | 2734582..2734685 | - | 104 | - | - | Toxin |
| HA514_RS13195 | 2734824..2735162 | - | 339 | WP_071922110.1 | YebY family protein | - |
| HA514_RS13200 | 2735179..2736048 | - | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| HA514_RS13205 | 2736050..2736421 | - | 372 | WP_032636204.1 | CopC domain-containing protein YobA | - |
| HA514_RS13210 | 2736559..2736789 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HA514_RS13215 | 2736900..2737550 | + | 651 | WP_058690984.1 | carbon-nitrogen hydrolase family protein | - |
| HA514_RS13220 | 2737575..2738237 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152196 NZ_CP050073:c2734685-2734582 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT152196 NZ_CP050073:2734576-2734720 [Enterobacter kobei]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
