Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1802440..1802586 | Replicon | chromosome |
| Accession | NZ_CP050067 | ||
| Organism | Klebsiella aerogenes strain 035 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1802475..1802578 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1802440..1802586 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HA513_RS08750 | 1797549..1799609 | + | 2061 | WP_046883145.1 | oligopeptidase B | - |
| HA513_RS08755 | 1799612..1800271 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| HA513_RS08760 | 1800351..1800581 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| HA513_RS08765 | 1800716..1801090 | + | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| HA513_RS08770 | 1801094..1801963 | + | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| HA513_RS08775 | 1801977..1802318 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1802440..1802586 | - | 147 | - | - | Antitoxin |
| - | 1802475..1802578 | + | 104 | - | - | Toxin |
| HA513_RS08780 | 1802706..1803659 | - | 954 | WP_072205596.1 | spore coat U domain-containing protein | - |
| HA513_RS08785 | 1803672..1805996 | - | 2325 | WP_045360584.1 | fimbrial biogenesis outer membrane usher protein | - |
| HA513_RS08790 | 1805999..1806748 | - | 750 | WP_058675525.1 | molecular chaperone | - |
| HA513_RS08795 | 1806766..1807292 | - | 527 | Protein_1703 | spore coat protein U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152175 NZ_CP050067:1802475-1802578 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT152175 NZ_CP050067:c1802586-1802440 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
