Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/YoeB-YefM
Location 5356753..5357291 Replicon chromosome
Accession NZ_CP050066
Organism Bradyrhizobium symbiodeficiens strain 101S1MB

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag HAV00_RS25415 Protein ID WP_094977521.1
Coordinates 5357025..5357291 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag HAV00_RS25410 Protein ID WP_094977520.1
Coordinates 5356753..5357019 (+) Length 89 a.a.

Genomic Context

HAV00_RS25410HAV00_RS25415HAV00_RS25385HAV00_RS25390HAV00_RS25395HAV00_RS25400HAV00_RS25405HAV00_RS25420HAV00_RS25425HAV00_RS25430
Location: 5356753..5357019 (267 bp)
Type: Antitoxin
Protein ID: WP_094977520.1
Location: 5357025..5357291 (267 bp)
Type: Toxin
Protein ID: WP_094977521.1
Location: 5352826..5353155 (330 bp)
Type: Others
Protein ID: WP_166470090.1
Location: 5353339..5354577 (1239 bp)
Type: Others
Protein ID: WP_166469111.1
Location: 5354751..5355203 (453 bp)
Type: Others
Protein ID: WP_166469112.1
Location: 5355246..5355932 (687 bp)
Type: Others
Protein ID: WP_166470091.1
Location: 5356347..5356514 (168 bp)
Type: Others
Protein ID: WP_008139339.1
Location: 5357295..5358623 (1329 bp)
Type: Others
Protein ID: WP_166469113.1
Location: 5358851..5359600 (750 bp)
Type: Others
Protein ID: WP_094977523.1
Location: 5359631..5360071 (441 bp)
Type: Others
Protein ID: WP_094977524.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
HAV00_RS253855352826..5353155-330WP_166470090.1hypothetical protein-
HAV00_RS253905353339..5354577-1239WP_166469111.1acyltransferase-
HAV00_RS253955354751..5355203-453WP_166469112.1hypothetical protein-
HAV00_RS254005355246..5355932-687WP_166470091.1hypothetical protein-
HAV00_RS254055356347..5356514-168WP_008139339.150S ribosomal protein L33-
HAV00_RS254105356753..5357019+267WP_094977520.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
HAV00_RS254155357025..5357291+267WP_094977521.1Txe/YoeB family addiction module toxinToxin
HAV00_RS254205357295..5358623-1329WP_166469113.1LLM class flavin-dependent oxidoreductase-
HAV00_RS254255358851..5359600-750WP_094977523.1NUDIX domain-containing protein-
HAV00_RS254305359631..5360071-441WP_094977524.1DUF983 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10662.24 Da        Isoelectric Point: 8.9066

>T152172 WP_094977521.1 NZ_CP050066:5357025-5357291 [Bradyrhizobium symbiodeficiens]
MLIAWTEIAWQDYLRWQQEDEKILSAINDLIKDIKRDPFKGIGKPEPLKHDLRGWWSRRITGEHRLVYRLQGKDDAQQLV
IAQCRYHY

Download         Length: 267 bp

>T152172 NZ_CP066019:c2190530-2190120 [Cupriavidus necator]
ATGACGCGCTACATGCTCGACACCAATATCGTGAGCCTTCTGTTGCGGGCACATCCGGCAGTCGTGGCACGCGTGACGGC
AGCGCCGATGGTGGCGCTGTGCCTGTCAGCCATCACCGGTGCGGAACTGATGTACGGGCTGGCCAAGCGTCCCGGCGCAG
CGCGCCTCGCGCGCGCGGTCGACGAGTTGCTGCGCAGGGTCGAGGTATTGCCCTGGACCCCTTCAGTGATGGCCGGCTAT
GGTGAAACCCGCGCTGCGCTGGAATCCCAAGGACAGCCGGTGGGGGCACTGAACCTGCTGATCGCCGCGCACGCGCTGGA
GACTGGCGCGGTGCTGGTGACCAATGACCAGGCATTCCGGCGCGTCCCTGGCCTGGTGGTGGAGGACTGGACGGTTCCGA
CCGGAAATTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9664.97 Da        Isoelectric Point: 4.8254

>AT152172 WP_094977520.1 NZ_CP050066:5356753-5357019 [Bradyrhizobium symbiodeficiens]
MAHVSYTELRGNLAAYMDQVCDDRAPLVVTRQNARSVVMLSEEEYEGLVETVHLLKSPANAARLLRSIKEADEGKLVAHE
LIEPGSTG

Download         Length: 267 bp

>AT152172 NZ_CP066019:c2190778-2190527 [Cupriavidus necator]
GTGAGCACCACTGCCAAGATCTTCACCACCGGCCGCAGCCAGGCGGTACGGCTGCCGCAGGAATTCCGCTTCGCCGAGCG
CGAGGTATATATTCGCCGTGACCCGTCCACCGGTGACGTGATCCTGTCGCGCCGGCCGGAGAGTTGGGACGGCTTTTTGG
CTGCCATCAAGGACAGCGCCGTGCCGGAAGACTTTATGGCCGACCGCGCGCAGGGCGAGCAAGCCAGGGATCCGCTGGCG
GGTCTCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References