Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 276679..276950 | Replicon | chromosome |
| Accession | NZ_CP050047 | ||
| Organism | Escherichia coli strain 90-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 276809..276912 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 276679..276950 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9P52_RS01395 | 273234..273896 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G9P52_RS01400 | 273920..274576 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| G9P52_RS01405 | 274678..274908 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9P52_RS01410 | 275047..275421 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| G9P52_RS01415 | 275425..276297 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| G9P52_RS01420 | 276310..276651 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 276679..276950 | - | 272 | - | - | Antitoxin |
| - | 276809..276912 | + | 104 | - | - | Toxin |
| G9P52_RS01425 | 277047..277703 | + | 657 | WP_000812710.1 | protein-serine/threonine phosphatase | - |
| G9P52_RS01430 | 277704..277895 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G9P52_RS01435 | 278000..278236 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G9P52_RS01440 | 278354..279793 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152122 NZ_CP050047:276809-276912 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCACTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCACTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152122 NZ_CP050047:c276950-276679 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGTGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGTGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
