Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910389..1910660 | Replicon | chromosome |
| Accession | NZ_CP050040 | ||
| Organism | Escherichia coli strain 63-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910519..1910622 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910389..1910660 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9P50_RS09040 | 1906944..1907606 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G9P50_RS09045 | 1907630..1908286 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| G9P50_RS09050 | 1908388..1908618 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9P50_RS09055 | 1908757..1909131 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G9P50_RS09060 | 1909135..1910007 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| G9P50_RS09065 | 1910020..1910361 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1910389..1910660 | - | 272 | - | - | Antitoxin |
| - | 1910519..1910622 | + | 104 | - | - | Toxin |
| G9P50_RS09070 | 1910757..1911413 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| G9P50_RS09075 | 1911414..1911605 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G9P50_RS09080 | 1911710..1911946 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G9P50_RS09085 | 1912064..1913503 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152080 NZ_CP050040:1910519-1910622 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152080 NZ_CP050040:c1910660-1910389 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
