Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006065..2006336 | Replicon | chromosome |
| Accession | NZ_CP050036 | ||
| Organism | Escherichia coli strain 58-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006195..2006298 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006065..2006336 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9P49_RS09615 | 2002620..2003282 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G9P49_RS09620 | 2003306..2003962 | - | 657 | WP_182116893.1 | carbon-nitrogen hydrolase family protein | - |
| G9P49_RS09625 | 2004064..2004294 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9P49_RS09630 | 2004433..2004807 | + | 375 | WP_094322552.1 | CopC domain-containing protein YobA | - |
| G9P49_RS09635 | 2004811..2005683 | + | 873 | WP_094322553.1 | copper homeostasis membrane protein CopD | - |
| G9P49_RS09640 | 2005696..2006037 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2006065..2006336 | - | 272 | - | - | Antitoxin |
| - | 2006195..2006298 | + | 104 | - | - | Toxin |
| G9P49_RS09645 | 2006433..2007089 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| G9P49_RS09650 | 2007090..2007281 | - | 192 | WP_001338167.1 | YebW family protein | - |
| G9P49_RS09655 | 2007386..2007622 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| G9P49_RS09660 | 2007740..2009179 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1969697..2022174 | 52477 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T152057 NZ_CP050036:2006195-2006298 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT152057 NZ_CP050036:c2006336-2006065 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
