Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3123924..3124073 | Replicon | chromosome |
| Accession | NZ_CP050009 | ||
| Organism | Citrobacter sp. Y3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3123930..3124033 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3123924..3124073 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP28_RS15065 | 3121033..3122472 | + | 1440 | WP_109740636.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HAP28_RS15070 | 3122587..3122823 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| HAP28_RS15075 | 3122925..3123116 | + | 192 | WP_043000391.1 | YebW family protein | - |
| HAP28_RS15080 | 3123117..3123779 | - | 663 | WP_109740319.1 | protein-serine/threonine phosphatase | - |
| - | 3123924..3124073 | + | 150 | - | - | Antitoxin |
| - | 3123930..3124033 | - | 104 | - | - | Toxin |
| HAP28_RS15085 | 3124189..3124527 | - | 339 | WP_043000379.1 | YebY family protein | - |
| HAP28_RS15090 | 3124544..3125416 | - | 873 | WP_090049236.1 | copper homeostasis membrane protein CopD | - |
| HAP28_RS15095 | 3125419..3125793 | - | 375 | WP_043000377.1 | CopC domain-containing protein YobA | - |
| HAP28_RS15100 | 3125931..3126161 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| HAP28_RS15105 | 3126270..3126932 | + | 663 | WP_109740320.1 | carbon-nitrogen hydrolase family protein | - |
| HAP28_RS15110 | 3126956..3127618 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151993 NZ_CP050009:c3124033-3123930 [Citrobacter sp. Y3]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 150 bp
>AT151993 NZ_CP050009:3123924-3124073 [Citrobacter sp. Y3]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
