Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2445947..2446087 | Replicon | chromosome |
| Accession | NZ_CP049980 | ||
| Organism | Leclercia adecarboxylata strain 707804 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2445949..2446051 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2445947..2446087 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7098_RS11535 | 2442105..2443220 | + | 1116 | WP_165718058.1 | recombinase RecT | - |
| G7098_RS11540 | 2443255..2443599 | + | 345 | WP_165718059.1 | hypothetical protein | - |
| G7098_RS11545 | 2443592..2444254 | + | 663 | WP_165718060.1 | hypothetical protein | - |
| G7098_RS11550 | 2444241..2444480 | + | 240 | WP_165718061.1 | DUF4060 family protein | - |
| G7098_RS11555 | 2444545..2444817 | + | 273 | WP_165718062.1 | excisionase | - |
| G7098_RS11560 | 2444786..2445871 | + | 1086 | WP_165718063.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2445947..2446087 | + | 141 | - | - | Antitoxin |
| - | 2445949..2446051 | - | 103 | - | - | Toxin |
| G7098_RS11565 | 2446193..2446534 | - | 342 | WP_165718622.1 | YebY family protein | - |
| G7098_RS11570 | 2446546..2447418 | - | 873 | WP_165718064.1 | copper homeostasis membrane protein CopD | - |
| G7098_RS11575 | 2447420..2447794 | - | 375 | WP_059307641.1 | CopC domain-containing protein YobA | - |
| G7098_RS11580 | 2447930..2448160 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| G7098_RS11585 | 2448268..2448924 | + | 657 | WP_165718065.1 | carbon-nitrogen hydrolase family protein | - |
| G7098_RS11590 | 2448949..2449611 | + | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2385170..2467459 | 82289 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151969 NZ_CP049980:c2446051-2445949 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT151969 NZ_CP049980:2445947-2446087 [Leclercia adecarboxylata]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
