Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3531415..3531686 | Replicon | chromosome |
| Accession | NZ_CP049979 | ||
| Organism | Escherichia coli strain IBS28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3531453..3531556 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3531415..3531686 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP53_RS16770 | 3528572..3530011 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HAP53_RS16775 | 3530129..3530365 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HAP53_RS16780 | 3530470..3530661 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HAP53_RS16785 | 3530662..3531318 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3531415..3531686 | + | 272 | - | - | Antitoxin |
| - | 3531453..3531556 | - | 104 | - | - | Toxin |
| HAP53_RS16790 | 3531714..3532055 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HAP53_RS16795 | 3532068..3532940 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HAP53_RS16800 | 3532944..3533318 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HAP53_RS16805 | 3533457..3533687 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HAP53_RS16810 | 3533789..3534445 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HAP53_RS16815 | 3534469..3535131 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151948 NZ_CP049979:c3531556-3531453 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT151948 NZ_CP049979:3531415-3531686 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
