Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1983592..1983736 | Replicon | chromosome |
| Accession | NZ_CP049953 | ||
| Organism | Klebsiella pneumoniae strain 19KM1109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1983628..1983730 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1983592..1983736 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9175_RS09735 | 1978722..1980782 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| G9175_RS09740 | 1980786..1981445 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| G9175_RS09745 | 1981524..1981754 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| G9175_RS09750 | 1981867..1982241 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| G9175_RS09755 | 1982245..1983114 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| G9175_RS09760 | 1983131..1983469 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1983592..1983736 | - | 145 | - | - | Antitoxin |
| - | 1983628..1983730 | + | 103 | - | - | Toxin |
| G9175_RS09765 | 1983863..1984222 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| G9175_RS09770 | 1984221..1984700 | + | 480 | WP_032419797.1 | lysis protein | - |
| G9175_RS09775 | 1985867..1986994 | + | 1128 | WP_064147220.1 | hypothetical protein | - |
| G9175_RS09780 | 1987244..1987672 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| G9175_RS09785 | 1987682..1987963 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151862 NZ_CP049953:1983628-1983730 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT151862 NZ_CP049953:c1983736-1983592 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
