Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2096953..2097484 Replicon chromosome
Accession NZ_CP049902
Organism Psychrobacter sp. WY6

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G7Y90_RS10460 Protein ID WP_250162344.1
Coordinates 2096953..2097243 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag G7Y90_RS10465 Protein ID WP_109591377.1
Coordinates 2097233..2097484 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G7Y90_RS10435 2092355..2093188 - 834 WP_087815627.1 Nif3-like dinuclear metal center hexameric protein -
G7Y90_RS10440 2093504..2094829 + 1326 WP_250162342.1 trypsin-like peptidase domain-containing protein -
G7Y90_RS10445 2094971..2095237 - 267 WP_045446158.1 class I ribonucleotide reductase maintenance protein YfaE -
G7Y90_RS10450 2095305..2096456 - 1152 WP_250162343.1 class Ia ribonucleoside-diphosphate reductase subunit beta -
G7Y90_RS10455 2096534..2096917 - 384 WP_087815623.1 hypothetical protein -
G7Y90_RS10460 2096953..2097243 - 291 WP_250162344.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
G7Y90_RS10465 2097233..2097484 - 252 WP_109591377.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
G7Y90_RS10470 2097639..2097776 - 138 WP_250162345.1 hypothetical protein -
G7Y90_RS10475 2098572..2098853 - 282 WP_250162346.1 hypothetical protein -
G7Y90_RS10480 2098865..2101136 - 2272 Protein_2065 class 1a ribonucleoside-diphosphate reductase subunit alpha -
G7Y90_RS10485 2101674..2101994 - 321 WP_045446256.1 DUF493 domain-containing protein -
G7Y90_RS10490 2102251..2102442 - 192 WP_250162347.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-72)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11315.40 Da        Isoelectric Point: 10.9434

>T151747 WP_250162344.1 NZ_CP049902:c2097243-2096953 [Psychrobacter sp. WY6]
MTYNLEFHPLALKEWKKIAPNIQQQFKKKLQQRLSNPHVPASKLSGRTDTYKIKLRTVGYRLVYTVKDDVVVVYVLAVGK
REKTKYMMRLRHATPN

Download         Length: 291 bp

>T151747 NZ_CP065695:c2812667-2811822 [Delftia acidovorans]
ATGAGCCGCGATATCGCAGCCTCGATCCGTGCACGTTTGAAGCAATGCGCGGACGCCCGCAGGCAGGACTTCAACCTCAC
GCTCACCCACTATGGCCTGGAGCGCCTGCTGTACCGCCTGTCCATCTCGCCCCATGCGGACAGCTATCTGCTCAAGGGCG
CACTGCTGTTCGCCATCTGGTACGAGCAGCCGCACAGGCCGACCCGCGACGCCGATCTGCTGGGCTTTGGCCTGGACGAC
GTTGACTCGGCGGTGAGCGCTTTCCGCGAGATCTGCGGGATTGCCGTGGACGACGGCATTGCCTTCGATGCCGCGTCGGT
GCGTGGAACCACCATCCGCAAGGAAGCCGGCTATGGCGAAGTACGGATTGACCTGCGCGCCACGCTGGACGGTGCACGCA
TCACGCTGCAGGTGGACATAGGCTTCGGCGATGCCGTGACACCATCGCCACAAGCCATCCGCTACCCCGTGCTGCTCGAC
GGCCTGCCCGCACCGCAACTGCGCAGCTACCCCAAGTACACCGTGGTGGCCGAAAAACTCCACGCGATATGCCTGCTGGG
CATGGCCAATACCCGGATGAAGGACTACTTCGATCTCTGGGTGTTGATGACCGAAGGCACGCTGGACCCTGCCGAACTGC
GGCGCGCCATGAAAGCGACCTTCGAGCGCCGCCAACTCGCGCTGCCCGCGGGCCTGCCTGCCGGATTGAGCGATGGTTTC
AGCAGCGATGCGGCCAAGCAGGCGCAGTGGGCCGCCTTCCTGAAGAAGAACCGGCTTGAAGCGCTGGAGCTGGCCCCTGT
CGTGGCAAGGCTGCGAGAGGAATTCCAGCAATGCGGCATCTTCTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9080.38 Da        Isoelectric Point: 4.2493

>AT151747 WP_109591377.1 NZ_CP049902:c2097484-2097233 [Psychrobacter sp. WY6]
MQPIFATQTASISELKTNPSALIKQSDGESIAILNHNKPVAYLVSTDVFERMMEAMDDMALSQTVSARLNDGQIPIKVTL
DDL

Download         Length: 252 bp

>AT151747 NZ_CP065695:c2813278-2812664 [Delftia acidovorans]
ATGCCCGCTCCTGGCTCCGCGCTCGAACAAGCCGTTCTGGCACTGGCCGAACAACGGCCGCTGCTGCGCGCACGCGACCT
TGCCGCGCTTGGCCTGCCGACCATGGCGCTGAGCCGGCTGGTCGCGGCAGGCCGCCTTGAACGCGTTGCACGCGGCCTGT
ACAGCCTGCCGGGCCGGCCGCTCAGCGAGCACCGCTCGCTGGCGGAAGTGGCCCTGCGCGTACCGCAAGGGGTGGTCTGC
CTGCTGTCCGCGCTGCGGGTCCACGGCATAGGAACGCAGGCACCCTTCGAGGTGTGGATGGCCATTCCCCATCACTCGCC
CACGCCCCGCATAGACCAGCCTGCATTGCGCGCCATCCGCATGTCCGGTGCGGCACTGTCCGAAGGCGTGGAAACTCTGC
AGATCGATGGCGTCGGTGTCGCCGTCTTCAACGCATCGAAGACCGTGGCCGATTGCTTCAAGTACCGCAACAAGATCGGC
CTGGATGTGGCGTTGGAAGCACTGCGCGACGGATGGGCGCAGGGCAAGCTGACGGCCGACGCGCTCTGGCACTACGCCGC
CATCGACCGCGTCAGCAATGTGATGCGCCCCTATCTCGAAAGCATCGCCGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References