Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RHH
Location 1411984..1412478 Replicon chromosome
Accession NZ_CP049889
Organism Jeotgalibaca porci strain CCUG 69148

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G7058_RS07295 Protein ID WP_166062904.1
Coordinates 1411984..1412256 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag G7058_RS07300 Protein ID WP_166062905.1
Coordinates 1412257..1412478 (-) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G7058_RS07275 1408194..1409141 + 948 WP_166062900.1 nucleoside hydrolase -
G7058_RS07280 1409566..1410474 + 909 WP_166062901.1 ABC transporter ATP-binding protein -
G7058_RS07285 1410474..1411262 + 789 WP_166062902.1 ABC transporter permease subunit -
G7058_RS07290 1411313..1411720 - 408 WP_166062903.1 hypothetical protein -
G7058_RS07295 1411984..1412256 - 273 WP_166062904.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G7058_RS07300 1412257..1412478 - 222 WP_166062905.1 ribbon-helix-helix protein, CopG family Antitoxin
G7058_RS07305 1412639..1413322 + 684 WP_166062906.1 DUF697 domain-containing protein -
G7058_RS07310 1413380..1415212 - 1833 WP_166062907.1 ABC transporter ATP-binding protein/permease -
G7058_RS07315 1415230..1415664 - 435 WP_166062908.1 MarR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-89)

Antitoxin

Protein of unknown function DUF6290

(1-71)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10502.14 Da        Isoelectric Point: 10.0028

>T151746 WP_166062904.1 NZ_CP049889:c1412256-1411984 [Jeotgalibaca porci]
MNSKYKVEFENGAQKTLKKLDKHQALLIMGWIQKNLVNCTNPRLHGKGLTANRSGEWRYRIGDYRLIADINDETVTILML
QIGHRKDIYD

Download         Length: 273 bp

>T151746 NZ_CP065695:c2312032-2311178 [Delftia acidovorans]
ATGACCGCGCAGACGCTGCAGCGCATGGAACAGCGCCTTCAGACGCAGTTCCCCGAACACCTCATCGCCCTGCCCGGTGG
CGCTCAGGCCGCCTGGCGCGAGGCCGGCGACACGGCCTCGGACTTTGCCGTGGTGATGCTGCACGGCATCAGCTCGGGCG
CCGCCTCCTGGCTGGACGTGGCCCTGGAGCTGGCGCCGCGCGCGCGTGTGCTGGCCTGGGACGCGCCCGGCTATGGCCGC
TCCACGCCGCTGGCACCCGACGCGCCCACGGGCGCCGACTACGCCCGCGTGCTGGAGCAGTCGCTGCAGGCGCTGGGCGT
GCGCCGCTGCCTGCTGGTGGGCCACTCGCTGGGTGCGCTCATGGGCACGCCCTGGGCGGTGCAGGCCGGTGCCGGGCGCG
TGCAGCAACTGGTGCTGATCAGCCCCGCTGGCGGCTATGGCGCACCCGGCATGGGCGAGCAGCAGGCCAAGGTACGCCAG
GGCCGTCTTGCGGCCCTTCAGGAAAAAGGCATCGAAGGCCTGGCCGCCGCCATCGACCAGCGCCTGGTCTCGCCCGCCGC
GCCCGAGCCCGTGCGCCAATGGGTGCGCTGGAACACGGCGCGCCTGCATGCTGCCGGCTACGCCCAGGCCGTGGAGCTGC
TGTGCGGCAGCGACCTGGGGCAGGCGGCGGGGCAACTGGCCATGCCGGTCGAGGTCTGGGTGGGAGAGCACGACGTGGTC
ACGCCGCCCGCCGCCTGTGCGGCCTGGGCCGCAAGGCTGGGCGCCCGGTACGTTACGCTTGCGGCAGCCGGCCATGCCTC
TGTCGTCGAACAACCTGCGGATGTCGCACAGAGGCTGGCCACCCTGCTGACCTGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8470.62 Da        Isoelectric Point: 4.3885

>AT151746 WP_166062905.1 NZ_CP049889:c1412478-1412257 [Jeotgalibaca porci]
MTVISLRLDEQEDKLIKEYAKTKNISVSALIRSSVLEKIEDEIDLGLYNQAMKEHRENPQSISFEDMLKELSD

Download         Length: 222 bp

>AT151746 NZ_CP065695:c2311155-2310349 [Delftia acidovorans]
ATGAGCGACACCTCCGAAACCCTCTCGAACGACAACGACCGCTACACCGTCCCCGCGCTGGAGCGCGGCCTGCGCCTGCT
GGCCTGCTTCACGCCTTCGCAGCCCGTGTGGAGCGCGCCCGACCTGGCGCGCACCCTGGCGCTGCCGCGTTCCACGGTGT
TCCGGATGCTGACGACGCTGGAGAACATGGGGTATCTGCAACGCTCGGGCACCGAGTACCGGCTGGGCCTGTCCGTGCTG
CGCCTGGGCTACGACTACCTGTCCACCCAGCCGCTGGCCCAGCTGGCCGAGCCCGTGCTGCAGGCGCTGTGCGAGCGCCT
GGGCTTCACCACCAACCTGGCGCTGCTGGACGGCACCTCCGTAGTCTACGTGGCGCGCATCGCGCCGGCCGGCGCCTTCC
AGGGCGCCGTGCGCGTGGGCTCGCGCCTGCCGGCCCATGCCACCGTGCTGGGCCGCGCCCTGCTGCAGGACATGGACGCA
GACCAGCTGCGCGAACTCTTCGGCGGCAGCGAGCTGCCGCAATTCTCGGAAAGCACCCCGCGCGACGTGCAGCAACTGCA
GCAGTTGCTGCTGCAGGACCGCGAGCGCGGCTACGCCATGGGCGAGGGCTTCTACGAGCCCGGCGTCTCCAGCATTGCCG
CACCCGTGCGCGATGCGCAGGGCCGCATCATCGCGGGCCTGGGCATGGCCGTGGCCTTTACCGAAATCGCACCCGGGCGC
ATGGCGCACTGGGTGGAACAGGTGCGCGAGGCCGCCGTCGAACTGACGGGCCACCTGCGCACCCAGCATCCTGGTTTTCT
GCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References