Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2608717..2608985 | Replicon | chromosome |
| Accession | NZ_CP049852 | ||
| Organism | Escherichia coli strain UPEC-774U/190308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2608755..2608857 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2608717..2608985 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9W34_RS12825 | 2605873..2607312 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G9W34_RS12830 | 2607431..2607667 | + | 237 | WP_001295499.1 | YebV family protein | - |
| G9W34_RS12835 | 2607772..2607963 | + | 192 | WP_024186842.1 | YebW family protein | - |
| G9W34_RS12840 | 2607964..2608620 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2608717..2608985 | + | 269 | - | - | Antitoxin |
| - | 2608755..2608857 | - | 103 | - | - | Toxin |
| G9W34_RS12845 | 2609015..2609356 | - | 342 | WP_000984819.1 | YebY family protein | - |
| G9W34_RS12850 | 2609369..2610241 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| G9W34_RS12855 | 2610245..2610619 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G9W34_RS12860 | 2610758..2610988 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9W34_RS12865 | 2611090..2611746 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G9W34_RS12870 | 2611770..2612432 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151720 NZ_CP049852:c2608857-2608755 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT151720 NZ_CP049852:2608717-2608985 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
