Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3115233..3115504 | Replicon | chromosome |
| Accession | NZ_CP049845 | ||
| Organism | Escherichia coli strain UPEC-245U/190328 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3115363..3115466 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3115233..3115504 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9W35_RS14960 | 3111788..3112450 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G9W35_RS14965 | 3112474..3113130 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G9W35_RS14970 | 3113232..3113462 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9W35_RS14975 | 3113601..3113975 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| G9W35_RS14980 | 3113979..3114851 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| G9W35_RS14985 | 3114864..3115205 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3115233..3115504 | - | 272 | - | - | Antitoxin |
| - | 3115363..3115466 | + | 104 | - | - | Toxin |
| G9W35_RS14990 | 3115601..3116257 | + | 657 | WP_074500259.1 | protein-serine/threonine phosphatase | - |
| G9W35_RS14995 | 3116258..3116449 | - | 192 | WP_000457842.1 | YebW family protein | - |
| G9W35_RS15000 | 3116554..3116790 | - | 237 | WP_001295499.1 | YebV family protein | - |
| G9W35_RS15005 | 3116908..3118347 | - | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151685 NZ_CP049845:3115363-3115466 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT151685 NZ_CP049845:c3115504-3115233 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
