Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2609095..2609363 | Replicon | chromosome |
| Accession | NZ_CP049839 | ||
| Organism | Escherichia coli strain UPEC-455U/190220 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2609133..2609235 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2609095..2609363 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G9W36_RS12830 | 2606251..2607690 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G9W36_RS12835 | 2607809..2608045 | + | 237 | WP_001295499.1 | YebV family protein | - |
| G9W36_RS12840 | 2608150..2608341 | + | 192 | WP_024186842.1 | YebW family protein | - |
| G9W36_RS12845 | 2608342..2608998 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 2609095..2609363 | + | 269 | - | - | Antitoxin |
| - | 2609133..2609235 | - | 103 | - | - | Toxin |
| G9W36_RS12850 | 2609393..2609734 | - | 342 | WP_000984819.1 | YebY family protein | - |
| G9W36_RS12855 | 2609747..2610619 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| G9W36_RS12860 | 2610623..2610997 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G9W36_RS12865 | 2611136..2611366 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G9W36_RS12870 | 2611468..2612124 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| G9W36_RS12875 | 2612148..2612810 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151653 NZ_CP049839:c2609235-2609133 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT151653 NZ_CP049839:2609095-2609363 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
