Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2609095..2609363 Replicon chromosome
Accession NZ_CP049839
Organism Escherichia coli strain UPEC-455U/190220

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2609133..2609235 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2609095..2609363 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G9W36_RS12830 2606251..2607690 + 1440 WP_024186841.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
G9W36_RS12835 2607809..2608045 + 237 WP_001295499.1 YebV family protein -
G9W36_RS12840 2608150..2608341 + 192 WP_024186842.1 YebW family protein -
G9W36_RS12845 2608342..2608998 - 657 WP_000812744.1 protein-serine/threonine phosphatase -
- 2609095..2609363 + 269 - - Antitoxin
- 2609133..2609235 - 103 - - Toxin
G9W36_RS12850 2609393..2609734 - 342 WP_000984819.1 YebY family protein -
G9W36_RS12855 2609747..2610619 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
G9W36_RS12860 2610623..2610997 - 375 WP_000168747.1 CopC domain-containing protein YobA -
G9W36_RS12865 2611136..2611366 + 231 WP_000916763.1 DNA polymerase III subunit theta -
G9W36_RS12870 2611468..2612124 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
G9W36_RS12875 2612148..2612810 + 663 WP_000944258.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T151653 NZ_CP049839:c2609235-2609133 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT151653 NZ_CP049839:2609095-2609363 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References