Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2877524..2877731 | Replicon | chromosome |
| Accession | NZ_CP049786 | ||
| Organism | Leclercia sp. 29361 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2877563..2877665 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2877524..2877731 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7090_RS13690 | 2873554..2874996 | + | 1443 | WP_166182776.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G7090_RS13695 | 2875101..2875340 | + | 240 | WP_106993305.1 | YebV family protein | - |
| G7090_RS13700 | 2875445..2875636 | + | 192 | WP_106993306.1 | YebW family protein | - |
| G7090_RS13705 | 2875637..2876281 | - | 645 | WP_166182777.1 | protein-serine/threonine phosphatase | - |
| G7090_RS13710 | 2876459..2877406 | + | 948 | WP_166182778.1 | VirK/YbjX family protein | - |
| - | 2877524..2877731 | + | 208 | - | - | Antitoxin |
| - | 2877563..2877665 | - | 103 | - | - | Toxin |
| G7090_RS13715 | 2877806..2878144 | - | 339 | WP_166182779.1 | YebY family protein | - |
| G7090_RS13720 | 2878159..2879020 | - | 862 | Protein_2689 | copper homeostasis membrane protein CopD | - |
| G7090_RS13725 | 2879021..2879395 | - | 375 | WP_166182780.1 | CopC domain-containing protein YobA | - |
| G7090_RS13730 | 2879532..2879762 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| G7090_RS13735 | 2879870..2880526 | + | 657 | WP_166182781.1 | carbon-nitrogen hydrolase family protein | - |
| G7090_RS13740 | 2880551..2881213 | + | 663 | WP_106993313.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2870845..2943687 | 72842 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151577 NZ_CP049786:c2877665-2877563 [Leclercia sp. 29361]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT151577 NZ_CP049786:2877524-2877731 [Leclercia sp. 29361]
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
