Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1907202..1907412 | Replicon | chromosome |
| Accession | NZ_CP049739 | ||
| Organism | Citrobacter sp. SX212 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1907304..1907407 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1907202..1907412 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G8S20_RS09360 | 1903722..1904384 | - | 663 | WP_061068071.1 | exodeoxyribonuclease X | - |
| G8S20_RS09365 | 1904407..1905063 | - | 657 | WP_061068070.1 | carbon-nitrogen hydrolase family protein | - |
| G8S20_RS09370 | 1905170..1905400 | - | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| G8S20_RS09375 | 1905543..1905917 | + | 375 | WP_253686470.1 | CopC domain-containing protein YobA | - |
| G8S20_RS09380 | 1905921..1906793 | + | 873 | WP_253686472.1 | copper homeostasis membrane protein CopD | - |
| G8S20_RS09385 | 1906810..1907148 | + | 339 | WP_061068068.1 | YebY family protein | - |
| - | 1907202..1907412 | - | 211 | - | - | Antitoxin |
| - | 1907304..1907407 | + | 104 | - | - | Toxin |
| G8S20_RS09390 | 1907772..1908554 | + | 783 | WP_124020966.1 | HNH endonuclease signature motif containing protein | - |
| G8S20_RS09395 | 1908800..1909430 | + | 631 | Protein_1832 | protein-serine/threonine phosphatase | - |
| G8S20_RS09400 | 1909431..1909622 | - | 192 | WP_048211387.1 | YebW family protein | - |
| G8S20_RS09405 | 1909695..1910612 | - | 918 | WP_124020965.1 | LysR substrate-binding domain-containing protein | - |
| G8S20_RS09410 | 1910793..1911920 | + | 1128 | WP_232034689.1 | MFS transporter | - |
| G8S20_RS09415 | 1911948..1912184 | - | 237 | WP_101742234.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151498 NZ_CP049739:1907304-1907407 [Citrobacter sp. SX212]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 211 bp
>AT151498 NZ_CP049739:c1907412-1907202 [Citrobacter sp. SX212]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
