Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 3662974..3663728 | Replicon | chromosome |
| Accession | NZ_CP049738 | ||
| Organism | Citrobacter sp. SX206 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A6I5AL91 |
| Locus tag | G8S19_RS17815 | Protein ID | WP_023567999.1 |
| Coordinates | 3663351..3663728 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | G8S19_RS17810 | Protein ID | WP_074143921.1 |
| Coordinates | 3662974..3663300 (+) | Length | 109 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G8S19_RS17765 (3658292) | 3658292..3659005 | + | 714 | WP_023567990.1 | sporulation transcriptional regulator SpoIIID | - |
| G8S19_RS17770 (3659007) | 3659007..3659156 | + | 150 | WP_001458941.1 | hypothetical protein | - |
| G8S19_RS17775 (3659168) | 3659168..3659383 | + | 216 | WP_023567991.1 | hypothetical protein | - |
| G8S19_RS17780 (3659433) | 3659433..3660380 | + | 948 | WP_023567992.1 | Ivy family c-type lysozyme inhibitor | - |
| G8S19_RS17785 (3660468) | 3660468..3660701 | + | 234 | WP_023567993.1 | DUF905 domain-containing protein | - |
| G8S19_RS17790 (3660812) | 3660812..3661633 | + | 822 | WP_023567994.1 | DUF932 domain-containing protein | - |
| G8S19_RS17795 (3661714) | 3661714..3662184 | + | 471 | WP_023567995.1 | antirestriction protein | - |
| G8S19_RS17800 (3662196) | 3662196..3662675 | + | 480 | WP_023567996.1 | DNA repair protein RadC | - |
| G8S19_RS17805 (3662696) | 3662696..3662917 | + | 222 | WP_023567997.1 | DUF987 domain-containing protein | - |
| G8S19_RS17810 (3662974) | 3662974..3663300 | + | 327 | WP_074143921.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| G8S19_RS17815 (3663351) | 3663351..3663728 | + | 378 | WP_023567999.1 | TA system toxin CbtA family protein | Toxin |
| G8S19_RS17820 (3663725) | 3663725..3664216 | + | 492 | WP_023568000.1 | DUF5983 family protein | - |
| G8S19_RS17825 (3664243) | 3664243..3664446 | + | 204 | WP_023568001.1 | DUF957 domain-containing protein | - |
| G8S19_RS17830 (3664528) | 3664528..3665373 | + | 846 | Protein_3493 | DUF4942 domain-containing protein | - |
| G8S19_RS17840 (3665716) | 3665716..3666024 | - | 309 | WP_232034718.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| G8S19_RS17845 (3666373) | 3666373..3667821 | - | 1449 | WP_116360953.1 | EAL domain-containing protein | - |
| G8S19_RS17850 (3668163) | 3668163..3668636 | - | 474 | WP_121584245.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14063.88 Da Isoelectric Point: 6.7110
>T151492 WP_023567999.1 NZ_CP049738:3663351-3663728 [Citrobacter sp. SX206]
MQTQPLSSTQEATPRPSPVEIWQRLLSHLLDRHYGLTLNDTPFGNDGVIQEHIDAGISLCDAVNFIVEKCDLVRTDRRGL
NAETQSPLLSSIDILRARKATGLMTRNDYKVVTDITNGKYREGQR
MQTQPLSSTQEATPRPSPVEIWQRLLSHLLDRHYGLTLNDTPFGNDGVIQEHIDAGISLCDAVNFIVEKCDLVRTDRRGL
NAETQSPLLSSIDILRARKATGLMTRNDYKVVTDITNGKYREGQR
Download Length: 378 bp
>T151492 NZ_CP065554:741622-742107 [Klebsiella pneumoniae]
ATGATCTCGGCACCAGAACCGCTTCATGCCGGGCATATTCTTACCCCGTTTTGCTGCGGTATAGATTCCATGGATCACTG
GCTGAAACAGCGGGCGATGAAAAATCAGGTTACTGGCGCATCCCGCACCTTTGTCTGCTGCGACGACGCGAAGGTGATGG
CTTACTACTCACTGGCTTCCAGCGCTGTGACGACAAATACTGCGCCGGGTCGTTTTCGCCGCAATATGCCTGCCCCGATC
CCGGTTGTGGTACTGGGTCGTCTGGCGGTGGATAAATCACTACATGGGAAAGGTGTCGGGCGGGCCCTGGTACGTGATGC
CGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCACGGG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCGATGGATCCGATGATGTTGATGGTGACGTTGAGGGATTTGGTTAAT
GCCTGA
ATGATCTCGGCACCAGAACCGCTTCATGCCGGGCATATTCTTACCCCGTTTTGCTGCGGTATAGATTCCATGGATCACTG
GCTGAAACAGCGGGCGATGAAAAATCAGGTTACTGGCGCATCCCGCACCTTTGTCTGCTGCGACGACGCGAAGGTGATGG
CTTACTACTCACTGGCTTCCAGCGCTGTGACGACAAATACTGCGCCGGGTCGTTTTCGCCGCAATATGCCTGCCCCGATC
CCGGTTGTGGTACTGGGTCGTCTGGCGGTGGATAAATCACTACATGGGAAAGGTGTCGGGCGGGCCCTGGTACGTGATGC
CGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCACGGG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCGATGGATCCGATGATGTTGATGGTGACGTTGAGGGATTTGGTTAAT
GCCTGA
Antitoxin
Download Length: 109 a.a. Molecular weight: 11953.71 Da Isoelectric Point: 6.8397
>AT151492 WP_074143921.1 NZ_CP049738:3662974-3663300 [Citrobacter sp. SX206]
ITEPWWGLKRSITPCFGARLVQAGNRLHYLADRANITGQFSDADLRYLDQAFPLLLKQLELMLTSGELNPCHQHCVTLYA
KGLTCEADSLGSHGYVYLAIYPTPAATA
ITEPWWGLKRSITPCFGARLVQAGNRLHYLADRANITGQFSDADLRYLDQAFPLLLKQLELMLTSGELNPCHQHCVTLYA
KGLTCEADSLGSHGYVYLAIYPTPAATA
Download Length: 327 bp
>AT151492 NZ_CP065554:741332-741625 [Klebsiella pneumoniae]
ATGCCAGCCGCAAACAGCATGTCCATAAAACGCGAAACGTTAAATCTGCGCATTAAACCTGCCGAACGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAGGCCGCCCGCGCTGCCGCTGAGGAAGCGCTGA
TTGAGCAACGCATCATTATGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGCACCTAAT
GCCGCACTGCGTAAAACTATGCAGACCCCTGCGCCGTGGGAACAGGAAGAATGA
ATGCCAGCCGCAAACAGCATGTCCATAAAACGCGAAACGTTAAATCTGCGCATTAAACCTGCCGAACGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACAGACTTTGTGCTGGAGGCCGCCCGCGCTGCCGCTGAGGAAGCGCTGA
TTGAGCAACGCATCATTATGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGCACCTAAT
GCCGCACTGCGTAAAACTATGCAGACCCCTGCGCCGTGGGAACAGGAAGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|