Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1876400..1876610 | Replicon | chromosome |
| Accession | NZ_CP049738 | ||
| Organism | Citrobacter sp. SX206 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1876502..1876605 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1876400..1876610 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G8S19_RS09145 | 1872920..1873582 | - | 663 | WP_061068071.1 | exodeoxyribonuclease X | - |
| G8S19_RS09150 | 1873605..1874261 | - | 657 | WP_061068070.1 | carbon-nitrogen hydrolase family protein | - |
| G8S19_RS09155 | 1874368..1874598 | - | 231 | WP_005120732.1 | DNA polymerase III subunit theta | - |
| G8S19_RS09160 | 1874741..1875115 | + | 375 | WP_253686470.1 | CopC domain-containing protein YobA | - |
| G8S19_RS09165 | 1875119..1875991 | + | 873 | WP_253686472.1 | copper homeostasis membrane protein CopD | - |
| G8S19_RS09170 | 1876008..1876346 | + | 339 | WP_061068068.1 | YebY family protein | - |
| - | 1876400..1876610 | - | 211 | - | - | Antitoxin |
| - | 1876502..1876605 | + | 104 | - | - | Toxin |
| G8S19_RS09175 | 1876970..1877752 | + | 783 | WP_124020966.1 | HNH endonuclease signature motif containing protein | - |
| G8S19_RS09180 | 1877998..1878628 | + | 631 | Protein_1790 | protein-serine/threonine phosphatase | - |
| G8S19_RS09185 | 1878629..1878820 | - | 192 | WP_048211387.1 | YebW family protein | - |
| G8S19_RS09190 | 1878893..1879810 | - | 918 | WP_124020965.1 | LysR substrate-binding domain-containing protein | - |
| G8S19_RS09195 | 1879991..1881118 | + | 1128 | WP_232034689.1 | MFS transporter | - |
| G8S19_RS09200 | 1881146..1881382 | - | 237 | WP_101742234.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1870839..1885676 | 14837 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151483 NZ_CP049738:1876502-1876605 [Citrobacter sp. SX206]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 211 bp
>AT151483 NZ_CP049738:c1876610-1876400 [Citrobacter sp. SX206]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACTAAAGTGGT
CTGAAAAAAAGGGAGATTGTCACTCGCTACAATGTAAAAACCGCAAGTTCT
