Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4135497..4135659 | Replicon | chromosome |
| Accession | NZ_CP049608 | ||
| Organism | Atlantibacter hermannii strain 78-1320 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4135548..4135652 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4135497..4135659 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FV156_RS19445 | 4130630..4132690 | + | 2061 | WP_165432119.1 | oligopeptidase B | - |
| FV156_RS19450 | 4132687..4133355 | - | 669 | WP_165432120.1 | exodeoxyribonuclease X | - |
| FV156_RS19455 | 4133402..4133632 | - | 231 | WP_002462888.1 | DNA polymerase III subunit theta | - |
| FV156_RS19460 | 4133783..4134157 | + | 375 | WP_040459491.1 | CopC domain-containing protein YobA | - |
| FV156_RS19465 | 4134159..4135034 | + | 876 | WP_165432121.1 | copper homeostasis membrane protein CopD | - |
| FV156_RS19470 | 4135059..4135397 | + | 339 | WP_040459559.1 | YebY family protein | - |
| - | 4135497..4135659 | - | 163 | - | - | Antitoxin |
| - | 4135548..4135652 | + | 105 | - | - | Toxin |
| FV156_RS19475 | 4136165..4136809 | + | 645 | WP_148052676.1 | metallophosphoesterase | - |
| FV156_RS19480 | 4136810..4137001 | - | 192 | WP_002462879.1 | YebW family protein | - |
| FV156_RS19485 | 4137109..4137348 | - | 240 | WP_002462877.1 | YebV family protein | - |
| FV156_RS19490 | 4137463..4138899 | - | 1437 | WP_165432122.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T151387 NZ_CP049608:4135548-4135652 [Atlantibacter hermannii]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 163 bp
>AT151387 NZ_CP049608:c4135659-4135497 [Atlantibacter hermannii]
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGT
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGT
