Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4263446..4263591 | Replicon | chromosome |
| Accession | NZ_CP049604 | ||
| Organism | Klebsiella pneumoniae strain Kp8701 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4263453..4263555 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4263446..4263591 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7L41_RS21360 | 4258977..4260410 | + | 1434 | WP_048292090.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| G7L41_RS21365 | 4260526..4260765 | + | 240 | WP_002911393.1 | YebV family protein | - |
| G7L41_RS21370 | 4260863..4261054 | + | 192 | WP_002911395.1 | YebW family protein | - |
| G7L41_RS21375 | 4261051..4261704 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| G7L41_RS21380 | 4261861..4262829 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| G7L41_RS21385 | 4262934..4263077 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4263446..4263591 | + | 146 | - | - | Antitoxin |
| - | 4263453..4263555 | - | 103 | - | - | Toxin |
| G7L41_RS21390 | 4263714..4264052 | - | 339 | WP_016529031.1 | YebY family protein | - |
| G7L41_RS21395 | 4264069..4264938 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| G7L41_RS21400 | 4264942..4265316 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| G7L41_RS21405 | 4265429..4265659 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| G7L41_RS21410 | 4265738..4266397 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| G7L41_RS21415 | 4266401..4268461 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T151347 NZ_CP049604:c4263555-4263453 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT151347 NZ_CP049604:4263446-4263591 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
