Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5230010..5230153 | Replicon | chromosome |
| Accession | NZ_CP049600 | ||
| Organism | Klebsiella aerogenes strain 18-2341 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5230015..5230118 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5230010..5230153 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7033_RS24755 | 5225266..5225784 | + | 519 | WP_047045373.1 | spore coat U domain-containing protein | - |
| G7033_RS24760 | 5225802..5226551 | + | 750 | WP_047045318.1 | molecular chaperone | - |
| G7033_RS24765 | 5226554..5228878 | + | 2325 | WP_047045321.1 | fimbrial biogenesis outer membrane usher protein | - |
| G7033_RS24770 | 5228896..5229846 | + | 951 | WP_047045323.1 | spore coat U domain-containing protein | - |
| - | 5230010..5230153 | + | 144 | - | - | Antitoxin |
| - | 5230015..5230118 | - | 104 | - | - | Toxin |
| G7033_RS24775 | 5230275..5230616 | - | 342 | WP_072251410.1 | YebY family protein | - |
| G7033_RS24780 | 5230630..5231499 | - | 870 | WP_045390338.1 | copper homeostasis membrane protein CopD | - |
| G7033_RS24785 | 5231503..5231877 | - | 375 | WP_045390336.1 | CopC domain-containing protein YobA | - |
| G7033_RS24790 | 5232012..5232242 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| G7033_RS24795 | 5232322..5232981 | + | 660 | WP_047045331.1 | exodeoxyribonuclease X | - |
| G7033_RS24800 | 5232984..5235044 | - | 2061 | WP_047045334.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151331 NZ_CP049600:c5230118-5230015 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT151331 NZ_CP049600:5230010-5230153 [Klebsiella aerogenes]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGTCAGCTTTTCCAGT
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGTCAGCTTTTCCAGT
