Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1955883..1956154 | Replicon | chromosome |
| Accession | NZ_CP049353 | ||
| Organism | Escherichia coli strain T28R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956013..1956116 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1955883..1956154 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G7B60_RS09415 | 1952438..1953100 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| G7B60_RS09420 | 1953124..1953780 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| G7B60_RS09425 | 1953882..1954112 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| G7B60_RS09430 | 1954251..1954625 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G7B60_RS09435 | 1954629..1955501 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| G7B60_RS09440 | 1955514..1955855 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1955883..1956154 | - | 272 | - | - | Antitoxin |
| - | 1956013..1956116 | + | 104 | - | - | Toxin |
| G7B60_RS09445 | 1956251..1956907 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| G7B60_RS09450 | 1956908..1957099 | - | 192 | WP_001296140.1 | YebW family protein | - |
| G7B60_RS09455 | 1957204..1957440 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| G7B60_RS09460 | 1957558..1958997 | - | 1440 | WP_024174420.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151289 NZ_CP049353:1956013-1956116 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT151289 NZ_CP049353:c1956154-1955883 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
