Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 518029..518576 Replicon chromosome
Accession NZ_CP049298
Organism Chryseobacterium sp. POL2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag G6R40_RS02380 Protein ID WP_165131134.1
Coordinates 518029..518328 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag G6R40_RS02385 Protein ID WP_165131196.1
Coordinates 518328..518576 (-) Length 83 a.a.

Genomic Context

G6R40_RS02370G6R40_RS02405G6R40_RS02410G6R40_RS02365G6R40_RS02375G6R40_RS02380G6R40_RS02385G6R40_RS02390G6R40_RS02395G6R40_RS02400
Location: 514543..516117 (1575 bp)
Type: Others
Protein ID: WP_165131100.1
Location: 521274..521423 (150 bp)
Type: Others
Protein ID: WP_165131202.1
Location: 521716..522933 (1218 bp)
Type: Others
Protein ID: WP_165131060.1
Location: 513741..514253 (513 bp)
Type: Others
Protein ID: WP_165131192.1
Location: 516444..517094 (651 bp)
Type: Others
Protein ID: WP_165131194.1
Location: 518029..518328 (300 bp)
Type: Toxin
Protein ID: WP_165131134.1
Location: 518328..518576 (249 bp)
Type: Antitoxin
Protein ID: WP_165131196.1
Location: 518857..519363 (507 bp)
Type: Others
Protein ID: WP_165131198.1
Location: 519600..520190 (591 bp)
Type: Others
Protein ID: WP_165131200.1
Location: 520424..521251 (828 bp)
Type: Others
Protein ID: WP_165131147.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
G6R40_RS02365513741..514253-513WP_165131192.1hypothetical protein-
G6R40_RS02370514543..516117+1575WP_165131100.1IS1182 family transposase-
G6R40_RS02375516444..517094-651WP_165131194.1hypothetical protein-
G6R40_RS02380518029..518328-300WP_165131134.1type II toxin-antitoxin system RelE/ParE family toxinToxin
G6R40_RS02385518328..518576-249WP_165131196.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
G6R40_RS02390518857..519363-507WP_165131198.1MepB family protein-
G6R40_RS02395519600..520190-591WP_165131200.1hypothetical protein-
G6R40_RS02400520424..521251-828WP_165131147.1GLPGLI family protein-
G6R40_RS02405521274..521423+150WP_165131202.1hypothetical protein-
G6R40_RS02410521716..522933+1218WP_165131060.1site-specific integrase-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-92)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 12257.86 Da        Isoelectric Point: 4.7620

>T151192 WP_165131134.1 NZ_CP049298:c518328-518029 [Chryseobacterium sp. POL2]
MNYKISKQAEIDLENIWLYTFEEWSIEQADYYFDLIMDEIEYISKNPKSGKDYNEIRKGYFRSRVKSHFIFYRINFKEEC
IEIIRILHQQMDVESHIND

Download         Length: 300 bp

>T151192 NZ_CP065367:c1300187-1299873 [Vibrio cyclitrophicus]
ATGGCTGTAATTAATTGGACTGAATCAGCATTATTAGATTTGGACGAAATTGCAGAATATATCGCTATTAATAATATTTT
AGCGGCTAAGGCTTTAGTTCAATCAGTTTTCCATCGTGTTGAGCGTTTAGAGGATTTTCCATTATCAGGCCGTAGTGCTC
CTGAGCTTCCTCATTTAGATTATCGTGAAATTGTATTACCGCCATGCCGTATTTTTTACAAAGTAACCAACGATGATATT
GTATATATTCTTTATGTCATGAGGGAAGAGCGCGAGTTACGCCAATTTGTTCTCAATGACCGTGGTTTGCAGTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9425.62 Da        Isoelectric Point: 9.7995

>AT151192 WP_165131196.1 NZ_CP049298:c518576-518328 [Chryseobacterium sp. POL2]
MAKNTSILLGDYFDNFINSQIKNGKYSSASEVVRAALRMFEHEETKKSELIKELKKGEKSGFSASFNRETFKQNLHQKYS
AE

Download         Length: 249 bp

>AT151192 NZ_CP065367:c1300432-1300178 [Vibrio cyclitrophicus]
ATGAAAGTTGAGCTAGTTACTACATTAAAACGTCAAGCAACCAAGATTCTTTCTGAGCTTCATGCTTCAAAAGAACCAGT
GTTAATTACAGAGCACGGCCAACCGTCTGCTTATTTGTTAGATGTTGATGATTACGAGTTTATGCAAAAACGTATTGCTA
TTCTTGAAGGTATTGCTCGCGGTGAAAAAGCAATTTCAGATAATCGTGTAGTTTCTCATGAAGTCGCAAAAGAGAAGATG
AATAAATGGCTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References