Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1842284..1842517 Replicon chromosome
Accession NZ_CP049285
Organism Shigella boydii strain 602068

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1842413..1842516 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1842284..1842517 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G5S54_RS09275 1837524..1838737 + 1214 WP_134810244.1 IS3 family transposase -
G5S54_RS09280 1838844..1839506 - 663 WP_000944260.1 exodeoxyribonuclease X -
G5S54_RS09285 1839530..1840186 - 657 WP_000011642.1 carbon-nitrogen hydrolase family protein -
G5S54_RS09290 1840288..1840518 - 231 WP_000916761.1 DNA polymerase III subunit theta -
G5S54_RS09295 1840657..1841031 + 375 WP_000168747.1 CopC domain-containing protein YobA -
G5S54_RS09300 1841035..1841902 + 868 Protein_1804 copper homeostasis membrane protein CopD -
G5S54_RS09305 1841915..1842256 + 342 WP_000976476.1 YebY family protein -
- 1842284..1842517 - 234 - - Antitoxin
- 1842413..1842516 + 104 - - Toxin
G5S54_RS09310 1842638..1843165 - 528 Protein_1806 tyrosine-type recombinase/integrase -
G5S54_RS09320 1844598..1845700 + 1103 Protein_1808 IS3 family transposase -
G5S54_RS09325 1845799..1846248 - 450 Protein_1809 IS1 family transposase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - ipaH9.8 1835053..1854695 19642


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T151156 NZ_CP049285:1842413-1842516 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT

Antitoxin


Download         Length: 234 bp

>AT151156 NZ_CP049285:c1842517-1842284 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References