Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 1842284..1842517 | Replicon | chromosome |
Accession | NZ_CP049285 | ||
Organism | Shigella boydii strain 602068 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 1842413..1842516 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 1842284..1842517 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
G5S54_RS09275 | 1837524..1838737 | + | 1214 | WP_134810244.1 | IS3 family transposase | - |
G5S54_RS09280 | 1838844..1839506 | - | 663 | WP_000944260.1 | exodeoxyribonuclease X | - |
G5S54_RS09285 | 1839530..1840186 | - | 657 | WP_000011642.1 | carbon-nitrogen hydrolase family protein | - |
G5S54_RS09290 | 1840288..1840518 | - | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
G5S54_RS09295 | 1840657..1841031 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
G5S54_RS09300 | 1841035..1841902 | + | 868 | Protein_1804 | copper homeostasis membrane protein CopD | - |
G5S54_RS09305 | 1841915..1842256 | + | 342 | WP_000976476.1 | YebY family protein | - |
- | 1842284..1842517 | - | 234 | - | - | Antitoxin |
- | 1842413..1842516 | + | 104 | - | - | Toxin |
G5S54_RS09310 | 1842638..1843165 | - | 528 | Protein_1806 | tyrosine-type recombinase/integrase | - |
G5S54_RS09320 | 1844598..1845700 | + | 1103 | Protein_1808 | IS3 family transposase | - |
G5S54_RS09325 | 1845799..1846248 | - | 450 | Protein_1809 | IS1 family transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | IScluster/Tn | - | ipaH9.8 | 1835053..1854695 | 19642 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151156 NZ_CP049285:1842413-1842516 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 234 bp
>AT151156 NZ_CP049285:c1842517-1842284 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT