Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2439729..2439963 | Replicon | chromosome |
| Accession | NZ_CP049281 | ||
| Organism | Shigella boydii strain 600657 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2439730..2439833 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2439729..2439963 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5S55_RS12785 | 2436633..2437330 | + | 698 | Protein_2487 | IS1 family transposase | - |
| G5S55_RS12790 | 2437613..2437810 | + | 198 | Protein_2488 | metallophosphoesterase | - |
| G5S55_RS12800 | 2439071..2439598 | + | 528 | Protein_2490 | tyrosine-type recombinase/integrase | - |
| - | 2439729..2439963 | + | 235 | - | - | Antitoxin |
| - | 2439730..2439833 | - | 104 | - | - | Toxin |
| G5S55_RS12805 | 2439991..2440332 | - | 342 | WP_000976477.1 | YebY family protein | - |
| G5S55_RS12810 | 2440345..2441217 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| G5S55_RS12815 | 2441221..2441595 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| G5S55_RS12820 | 2441734..2441964 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| G5S55_RS12825 | 2442066..2442722 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| G5S55_RS12830 | 2442746..2443408 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ipaH9.8 | 2430867..2440332 | 9465 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T151139 NZ_CP049281:c2439833-2439730 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT151139 NZ_CP049281:2439729-2439963 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
