Detailed information of TA system TA151083

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /RES-Xre
• Location: 225101..225965
• Replicon: plasmid unnamed3
• Accession: NZ_CP049244
• Organism: Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: G6N78_RS20015
• Protein ID: WP_165223000.1
• Coordinates: 225101..225601 (-)
• Length: 167 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: G6N78_RS20020
• Protein ID: WP_165223002.1
• Coordinates: 225594..225965 (-)
• Length: 124 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
G6N78_RS19995	220865..221683	-	819	WP_165222992.1	ABC transporter permease subunit	-
G6N78_RS20000	221744..222814	-	1071	WP_165222994.1	putative urea ABC transporter substrate-binding protein	-
G6N78_RS20005	223280..224053	+	774	WP_165222996.1	DUF1194 domain-containing protein	-
G6N78_RS20010	224059..224838	-	780	WP_165222998.1	SDR family oxidoreductase	-
G6N78_RS20015	225101..225601	-	501	WP_165223000.1	RES domain-containing protein	Toxin
G6N78_RS20020	225594..225965	-	372	WP_165223002.1	DUF2384 domain-containing protein	Antitoxin
G6N78_RS20025	226081..226293	-	213	WP_165223004.1	hypothetical protein	-
G6N78_RS20030	226304..226489	-	186	WP_165223006.1	hypothetical protein	-
G6N78_RS20035	226639..228276	+	1638	WP_165225272.1	alpha-glucosidase	-
G6N78_RS20040	228513..229619	+	1107	WP_165223007.1	BMP family ABC transporter substrate-binding protein	-
G6N78_RS20045	229732..230847	+	1116	WP_165223009.1	ABC transporter permease	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	adeG	1..1272887	1272887

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• RES domain (6-160)

Antitoxin

• Antitoxin Xre/MbcA/ParS-like, toxin-binding domain (72-120)

Sequences

Toxin

Protein

• Length: 167 a.a.
• Molecular weight: 18279.57 Da
• Isoelectric Point: 6.6003

>T151083 WP_165223000.1 NZ_CP049244:c225601-225101 [Rhizobium pseudoryzae]
MPDLILWRAYVPRWSHRPLSGEGAARFGGRWNPVGLPTIYAARELSTAWAEYNQGFVQHPALIAQLHLANAHLADLTDTA
FLAGFGADASIHDCAWRADMEAGRVPETHRLQALLQAADYHGLIYPSFMSRGGSCVALWKWNGEDGPSLTVSDPEGRLPR
NATSWT

Nucleotide

• Length: 501 bp

>T151083 NZ_CP065228:2623551-2623703 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Antitoxin

Protein

• Length: 124 a.a.
• Molecular weight: 13293.31 Da
• Isoelectric Point: 8.5372

>AT151083 WP_165223002.1 NZ_CP049244:c225965-225594 [Rhizobium pseudoryzae]
MGSTGLDMSVMAFREPQTAHLSPRRVSELLGLTQTELARLIGVARNTLNAPASLRKVDQALGPLVRVLAMVTDMAGDEQR
AALWFKHQPIPGWAGKTAYDLVGEGKSDQVLSYLEAVRSGVYA

Nucleotide

• Length: 372 bp

>AT151083 NZ_CP065228:2623767-2623901 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA