Detailed information of TA system TA151082

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): PumAB/COG3657-COG3657
• Location: 3479902..3480490
• Replicon: chromosome
• Accession: NZ_CP049241
• Organism: Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)

• Gene name: PumA
• Uniprot ID: -
• Locus tag: G6N78_RS16965
• Protein ID: WP_165220629.1
• Coordinates: 3479902..3480219 (+)
• Length: 106 a.a.

Antitoxin (Protein)

• Gene name: PumB
• Uniprot ID: -
• Locus tag: G6N78_RS16970
• Protein ID: WP_165220631.1
• Coordinates: 3480200..3480490 (+)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Addiction module killer protein, predicted (4-96)

Antitoxin

• Uncharacterized protein HI1420 (5-92)

Sequences

Toxin

Protein

• Length: 106 a.a.
• Molecular weight: 11973.81 Da
• Isoelectric Point: 10.0609

>T151082 WP_165220629.1 NZ_CP049241:3479902-3480219 [Rhizobium pseudoryzae]
MPQLKQSATFEKWLRKRGDERAKAIIAARLQRLVSGLMGDIAPIGDGISELRIHYGPGYRIYLKQQGDVYIILLCAGDKG
FQQRDIETAKRIAADWRTQDDRTLQ

Nucleotide

• Length: 318 bp

>T151082 NZ_CP065228:c2010568-2010287 [Xanthomonas oryzae pv. oryzae]
GTGATCAGGAGCTTTATCGACAAGGACGCCGAAAAGATCTGGCTGGGTGAGCGTTCCCGCCGGTTGCCTGCCGACATCCA
ATTGGTCGCGCGCCGCAAGTTGCGCATGCTCAATGCCGCCGCACATCTCGACGATCTGCGGATCCCGCCCGCCAACCGGC
TGGAAGCGTTGAAGGGCCAGCGGCGCGGCCAGTACAGCATCCGGATCAACGATCAATGGCGCATCTGCTTCCGATGGATG
GAAGGCGATGTGGTCCAGGTCGAAATCGTCGATTACCACTGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10206.57 Da
• Isoelectric Point: 4.7672

>AT151082 WP_165220631.1 NZ_CP049241:3480200-3480490 [Rhizobium pseudoryzae]
MTERFSDFDLADLLKADAAIEVFLADAFETGDSAHIASAIGTVARAKGMTKVAKETGLAREQLYRSLSENGNPTLETTLA
VLKSLGFQLTAKQSVA

Nucleotide

• Length: 291 bp

>AT151082 NZ_CP065228:c2010269-2009979 [Xanthomonas oryzae pv. oryzae]
ATGACGGTCCTACCCAATATCCATCCTGGCGACATTCTGCTTGAGGAGTTTCTCGAGCCTCTGGGCATCAGCCAGAATGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCCGTATCAACGAAATCGTGCTGGGCAAGCGCGGCATCACTGCCGACACTG
CCGTGCGTCTGGCCGCCGCGTTGGGCACCTCCGAGCGCTTCTGGCTGGGCCTGCAGGCCGACTACGAGCTGGAACAGGCG
CATCGCGCGCTGGGGGATTTGCCGGCACGGATCAAGCGGCTGGCGGCGTGA