Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumAB/COG3657-COG3657
Location 3479902..3480490 Replicon chromosome
Accession NZ_CP049241
Organism Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag G6N78_RS16965 Protein ID WP_165220629.1
Coordinates 3479902..3480219 (+) Length 106 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag G6N78_RS16970 Protein ID WP_165220631.1
Coordinates 3480200..3480490 (+) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6N78_RS16945 3475377..3477512 - 2136 WP_165220621.1 molybdopterin oxidoreductase family protein -
G6N78_RS16950 3477599..3478465 + 867 WP_165220623.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
G6N78_RS16955 3478566..3479228 + 663 WP_206531580.1 ribonuclease -
G6N78_RS16960 3479258..3479854 + 597 WP_165220627.1 glutathione S-transferase -
G6N78_RS16965 3479902..3480219 + 318 WP_165220629.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G6N78_RS16970 3480200..3480490 + 291 WP_165220631.1 putative addiction module antidote protein Antitoxin
G6N78_RS16975 3480563..3481201 - 639 WP_165220633.1 porin family protein -
G6N78_RS16980 3481204..3481521 - 318 WP_165220636.1 hypothetical protein -
G6N78_RS16985 3481610..3482326 + 717 WP_165221922.1 SDR family oxidoreductase -
G6N78_RS16990 3482323..3484371 + 2049 WP_165220639.1 excinuclease ABC subunit UvrC -
G6N78_RS16995 3484464..3485051 + 588 WP_165220642.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
G6N78_RS17000 3485048..3485305 + 258 WP_165220645.1 molybdopterin converting factor subunit 1 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(4-96)

Antitoxin

Uncharacterized protein HI1420

(5-92)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 11973.81 Da        Isoelectric Point: 10.0609

>T151082 WP_165220629.1 NZ_CP049241:3479902-3480219 [Rhizobium pseudoryzae]
MPQLKQSATFEKWLRKRGDERAKAIIAARLQRLVSGLMGDIAPIGDGISELRIHYGPGYRIYLKQQGDVYIILLCAGDKG
FQQRDIETAKRIAADWRTQDDRTLQ

Download         Length: 318 bp

>T151082 NZ_CP065228:c2010568-2010287 [Xanthomonas oryzae pv. oryzae]
GTGATCAGGAGCTTTATCGACAAGGACGCCGAAAAGATCTGGCTGGGTGAGCGTTCCCGCCGGTTGCCTGCCGACATCCA
ATTGGTCGCGCGCCGCAAGTTGCGCATGCTCAATGCCGCCGCACATCTCGACGATCTGCGGATCCCGCCCGCCAACCGGC
TGGAAGCGTTGAAGGGCCAGCGGCGCGGCCAGTACAGCATCCGGATCAACGATCAATGGCGCATCTGCTTCCGATGGATG
GAAGGCGATGTGGTCCAGGTCGAAATCGTCGATTACCACTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10206.57 Da        Isoelectric Point: 4.7672

>AT151082 WP_165220631.1 NZ_CP049241:3480200-3480490 [Rhizobium pseudoryzae]
MTERFSDFDLADLLKADAAIEVFLADAFETGDSAHIASAIGTVARAKGMTKVAKETGLAREQLYRSLSENGNPTLETTLA
VLKSLGFQLTAKQSVA

Download         Length: 291 bp

>AT151082 NZ_CP065228:c2010269-2009979 [Xanthomonas oryzae pv. oryzae]
ATGACGGTCCTACCCAATATCCATCCTGGCGACATTCTGCTTGAGGAGTTTCTCGAGCCTCTGGGCATCAGCCAGAATGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCCGTATCAACGAAATCGTGCTGGGCAAGCGCGGCATCACTGCCGACACTG
CCGTGCGTCTGGCCGCCGCGTTGGGCACCTCCGAGCGCTTCTGGCTGGGCCTGCAGGCCGACTACGAGCTGGAACAGGCG
CATCGCGCGCTGGGGGATTTGCCGGCACGGATCAAGCGGCTGGCGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References