Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 1294651..1295183 Replicon chromosome
Accession NZ_CP049241
Organism Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag G6N78_RS06375 Protein ID WP_165216684.1
Coordinates 1294651..1294941 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag G6N78_RS06380 Protein ID WP_165216686.1
Coordinates 1294938..1295183 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6N78_RS06355 1291066..1291488 + 423 WP_165216677.1 hypothetical protein -
G6N78_RS06360 1291581..1292048 + 468 WP_165216679.1 MarR family transcriptional regulator -
G6N78_RS06365 1292060..1293253 + 1194 WP_206531635.1 Bcr/CflA family efflux MFS transporter -
G6N78_RS06370 1293310..1294533 - 1224 WP_165216682.1 argininosuccinate synthase -
G6N78_RS06375 1294651..1294941 - 291 WP_165216684.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
G6N78_RS06380 1294938..1295183 - 246 WP_165216686.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
G6N78_RS06385 1295285..1296145 + 861 WP_165216688.1 SDR family NAD(P)-dependent oxidoreductase -
G6N78_RS06390 1296207..1296848 + 642 WP_165216689.1 LysE family translocator -
G6N78_RS06395 1296859..1297521 - 663 WP_165216699.1 thiaminase II -
G6N78_RS06400 1297527..1298768 - 1242 WP_165216708.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
G6N78_RS06405 1299012..1299515 - 504 WP_165216710.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11177.76 Da        Isoelectric Point: 9.4591

>T151078 WP_165216684.1 NZ_CP049241:c1294941-1294651 [Rhizobium pseudoryzae]
MKNLIISPRAGDDIDEIYDYTEARWGQDQAEDYTFGIRQALQEVCRGTRNGKSINHIRKGAMSLSFRSHYLIYQEKAASI
ILIRILHQRMNIGRHL

Download         Length: 291 bp

>T151078 NZ_CP065211:385503-385844 [Enterococcus lactis]
GTGTCAGAAGAAAGAATTTATATTCCTAAAAAAGGTGATATTGTGTGGATTGATTTTGATCCTTCGATAGGAAAAGAAAT
TCAAAAAAGACGACCAGGACTAGTCGTCTCTCGTTATGAGTTTAATCGTAAAACAATGTTTTCGGTCATATGTCCGATTA
CTTCCACGATAAAGAATTTACCGACACGTTACTCATTACCAGAAGAGCTAGATATAAAAGGACAAGTACTTATTTCTCAA
TTAAAATCACTTGATTTTAAGGAACGAAGACTCAAAAAAATAGAAAACCTGCCATTGCAAGACATGGCTAAAATTGATCA
GATTATACAATATATGTTTTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8866.89 Da        Isoelectric Point: 4.1634

>AT151078 WP_165216686.1 NZ_CP049241:c1295183-1294938 [Rhizobium pseudoryzae]
MGKIATITVEGELAEFMEHKVSVGDYASEAEVVEAALELLRDQDGLLAIRAAIEEGEASGEPQPFDFDAFIERKRARNAS
R

Download         Length: 246 bp

>AT151078 NZ_CP065211:385273-385503 [Enterococcus lactis]
ATGCTTGTTACAAAATCTAGATTACAAGGAAGTTCTGTAGTGGTTACTTTACCTTCTGATAACGGAAAGAAACCTTCAGA
AAACCAAGAATATATCGTTGTATATTCTGACGATGGGACAATTACGTTAGTTCCAAAAATTGAAGATCCATTTAGTGGTG
GAGAAGAGGCCGAATATTATGAAAAAGACGAATGGGAAGATTTAACTCCTGAAGGGAGAGAAAGGTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References