151075

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/HTH_26(antitoxin)
Location 148507..149109 Replicon chromosome
Accession NZ_CP049241
Organism Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag G6N78_RS00905 Protein ID WP_165214655.1
Coordinates 148864..149109 (-) Length 82 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag G6N78_RS00900 Protein ID WP_165214652.1
Coordinates 148507..148857 (-) Length 117 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6N78_RS00880 143551..145356 - 1806 WP_165214641.1 GGDEF domain-containing protein -
G6N78_RS00885 145465..146019 - 555 WP_165214644.1 HdeD family acid-resistance protein -
G6N78_RS00890 146177..146788 + 612 WP_165214647.1 transcriptional regulator BetI -
G6N78_RS00895 146785..148248 + 1464 WP_165214650.1 betaine-aldehyde dehydrogenase -
G6N78_RS00900 148507..148857 - 351 WP_165214652.1 helix-turn-helix transcriptional regulator Antitoxin
G6N78_RS00905 148864..149109 - 246 WP_165214655.1 cytotoxic translational repressor of toxin-antitoxin stability system Toxin
G6N78_RS00910 149205..150860 + 1656 WP_165214677.1 choline dehydrogenase -
G6N78_RS00915 150915..151136 - 222 WP_165214679.1 ribbon-helix-helix domain-containing protein -
G6N78_RS00920 151249..151842 + 594 WP_165214681.1 RNA polymerase sigma factor -
G6N78_RS00925 151835..152149 + 315 WP_165214683.1 hypothetical protein -
G6N78_RS00930 152146..152595 + 450 WP_165214685.1 periplasmic heavy metal sensor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(67-114)


Sequences

Toxin        


Download         Length: 82 a.a.        Molecular weight: 9122.83 Da        Isoelectric Point: 11.0727

>T151075 WP_165214655.1 NZ_CP049241:c149109-148864 [Rhizobium pseudoryzae]
MKEVVVSQRADKALQNMQPKRRLAILAKVKAYARGERVDIKKLKGLELWRIRVGNDRVIIDDQGGIVLVVPAGPRGSIYK
E

Download         Length: 246 bp

>T151075 NZ_CP065210:190137-190403 [Enterococcus faecium]
ATGAGTAACTATACAGTCGCAATCAAAAACTCTGCGAAAGTGGATTTAAGAAAAATCAAGCAATCGAATTTAAAGAAACA
ATTTGAAGAAGTGATTCAGACATTGAAGGAAGATCCATATATGCCCACGCAGTCTTTTGAAAAGCTGAGACCTACACATG
AAGGCAGATACTCACGCAGGCTGAATAGACAGCATCGAGTGGTTTACAAAGTTGATGAGGAAAATAAAGTTGTGGAAATT
TATTCTGCCTGGACACATTATGAGTGA

Antitoxin


Download         Length: 117 a.a.        Molecular weight: 12693.47 Da        Isoelectric Point: 4.4393

>AT151075 WP_165214652.1 NZ_CP049241:c148857-148507 [Rhizobium pseudoryzae]
MGRVQKIEIEGKSYVLLSEEDYEDLVDGLEASAVLAKVADGQEVWPLEIVEARANGENPVRVFRTYRKMSVSELAAAAAI
SQPYLSEIESGKKTGSVDVLKRIAAALKVDLDDIVR

Download         Length: 351 bp

>AT151075 NZ_CP065210:189874-190137 [Enterococcus faecium]
ATGGCTAATACAACGATGAATCCTAGCACTGCTCGTAAAAATTTTTATCAGTTATTGAAAGAGGTAAATGAAAATCATAC
TGAAATCGAGATTATTAGTGATCGTAGTGGAAACAATGCTGTATTGATTGGGCTAGAAGACTGGAGAGCGATTCAAGAAA
CCCTTTTTCTTGAGCAAACAGGTACTTTAGATAAAGTACGAGACCGCGAAAAAGACGACAGTGGCTTTACGAATATCGAT
GATATTGATTGGGAAGCTCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References