Detailed information of TA system TA151073

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE-RelB
• Location: 34549..35126
• Replicon: chromosome
• Accession: NZ_CP049241
• Organism: Rhizobium pseudoryzae strain DSM 19479

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: G6N78_RS00205
• Protein ID: WP_165214314.1
• Coordinates: 34549..34827 (-)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: G6N78_RS00210
• Protein ID: WP_165214316.1
• Coordinates: 34824..35126 (-)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
G6N78_RS00185	30403..31044	+	642	WP_165214308.1	porin family protein	-
G6N78_RS00190	31278..31481	-	204	WP_165214310.1	heavy-metal-associated domain-containing protein	-
G6N78_RS00195	31493..31927	-	435	WP_165214312.1	Cu(I)-responsive transcriptional regulator	-
G6N78_RS00200	31924..34395	-	2472	WP_165221070.1	heavy metal translocating P-type ATPase	-
G6N78_RS00205	34549..34827	-	279	WP_165214314.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
G6N78_RS00210	34824..35126	-	303	WP_165214316.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
G6N78_RS00215	35231..37420	-	2190	WP_165214318.1	methyl-accepting chemotaxis protein	-
G6N78_RS00220	37698..38591	-	894	WP_165214320.1	NAD(P)-dependent oxidoreductase	-
G6N78_RS00225	38699..38980	-	282	WP_165214322.1	YrhK family protein	-
G6N78_RS00230	39085..39510	-	426	WP_165214324.1	type II toxin-antitoxin system VapC family toxin	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-90)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (1-57)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10500.05 Da
• Isoelectric Point: 5.8269

>T151073 WP_165214314.1 NZ_CP049241:c34827-34549 [Rhizobium pseudoryzae]
VRLFWSDAAVSDRDTIFDYIALDNPQAAIELDLKLSAAASRLLTFPQSGRCGRVERTRELPLVGTPYVIVYRVEEERVRV
LRVLHGAQMWPD

Nucleotide

• Length: 279 bp

>T151073 NZ_CP065208:c14966-14664 [Vibrio cyclitrophicus]
ATGACGCACTATAAGCTTTCTTCTGCAGCGCAATCTGATCTCATTGAGATTCGTCGCTATACATTAGAGCGATGGGGGCA
AACACAATGGACGACTTATTTTTCAGAGCTCAAGCAATCCATGGAATTACTAGCGAACAACCAACTGCTTGGCATAGGAG
TTTCTGAACTGGGCCAAAATTACTTCCGGTTTCCTTTAAAGCACCATGTGATTTATTACATCCAAAAACAAGAGCACATC
GTTATTGCAGCCGTTCTTGGTAAGCACATGTCTCCGGCCAAGCACTTTTCACAACTCTCTTAA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 10926.54 Da
• Isoelectric Point: 5.7363

>AT151073 WP_165214316.1 NZ_CP049241:c35126-34824 [Rhizobium pseudoryzae]
MPANALVQTRIDADIRDRASAVLETMGLTLSDAVRILLTRTANEGAVPMELLVDPKAHDAWFRAKVLEALEETGPGLPHE
DVEARFAERRRAVLAKGGPR

Nucleotide

• Length: 303 bp

>AT151073 NZ_CP065208:c15226-14966 [Vibrio cyclitrophicus]
ATGCAATCACTTACTGCTAATACAGCTAAAACCAAATTTGGTGACTTACTGATGAAGGTTCAACGTGAACCTGTACAAAT
TAATAAGAACGGTTCACCCGTTGCGGTGATGATGTCTTGTGAAGAATATGAACAACTTGAAGCATTGAAATTGATGGTGG
TGAAATCGCGCTTCGAACAAGCAGAGGCCGATGTTCTATCAGATAACCTAGTCGACGGTGACGATTTCATGAATGCACTT
GACCAAGGTAAGTTTGATTAA